RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 KIR3DL2P43630 455 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 PTH2RP49190 550 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 COL28A1Q2UY09 1125 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 PLCZ1Q86YW0 608 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 DND1Q8IYX4 353 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 SLC38A9Q8NBW4 561 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 DNAAF1Q8NEP3 725 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 OR52I2Q8NH67 350 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 S100A16Q96FQ6 103 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 VSX1Q9NZR4 365 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 ATXN7L1Q9ULK2 861 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 FOXJ3Q9UPW0 622 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 HSPB2A8KAH6 182 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 GABARAPH6UMI1 98 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 SLC16A7O60669 478 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 RAB40ALP0C0E4 278 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 CENPAP49450 140 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 RASGEF1BQ0VAM2 473 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 HSPB2Q16082 182 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 OR5M10Q6IEU7 315 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 BTN2A1Q7KYR7 527 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 APCDD1LQ8NCL9 501 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 STK35Q8TDR2 534 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 GPR148Q8TDV2 347 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 RAB40AQ8WXH6 277 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 ATOH1Q92858 354 aaPredicted RBP18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 C4orf45Q96LM5 186 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 OR8B4Q96RC9 309 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 ULBP3Q9BZM4 244 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 SEMA4CQ9C0C4 833 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 ELOVL3Q9HB03 270 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 MRPL22Q9NWU5 206 aaKnown RBP18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 SRPK3Q9UPE1 567 aa18.78■□□□□ 0.6
CCDC88B-203ENST00000359902 IGLV1-36A0A0B4J1U3 117 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 CCDC85CA6NKD9 419 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 ZNF354AO60765 605 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 H2AFB2P0C5Z0 115 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 RPS15P62841 145 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 MEP1BQ16820 701 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 ODF4Q2M2E3 257 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 LAMTOR1Q6IAA8 161 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 PTCRAQ6ISU1 281 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 FDX2Q6P4F2 183 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 TMEM71Q6P5X7 295 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 LRRN1Q6UXK5 716 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 SLC35D2Q76EJ3 337 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 OR11H7Q8NGC8 314 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 ZNF417Q8TAU3 575 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 TMEM106AQ96A25 262 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 CLDN23Q96B33 292 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 OR2M2Q96R28 347 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 ZNF587Q96SQ5 575 aaPredicted RBP18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 GON7Q9BXV9 100 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 SLC7A5P2Q9GIP4 190 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 OR51J1Q9H342 316 aa18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 MRPL15Q9P015 296 aaKnown RBP18.77■□□□□ 0.6
CCDC88B-203ENST00000359902 IGLV3-12A0A075B6K2 115 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 H3BSH0 61 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 SULT1B1O43704 296 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 OR6A2O95222 327 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 AHSA1O95433 338 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 STOMP27105 288 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 CXCL12P48061 93 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 RAG2P55895 527 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 SLC26A5P58743 744 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 SLC17A1Q14916 467 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 ETFDHQ16134 617 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 GSG1Q2KHT4 349 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 WDR38Q5JTN6 314 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 ANKRD37Q7Z713 158 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 NFAM1Q8NET5 270 aaPredicted RBP18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 MIB2Q96AX9 1013 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 HAVCR1Q96D42 359 aa18.77■□□□□ 0.59
CCDC88B-203ENST00000359902 SLC22A23A1A5C7 686 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 C2orf72A6NCS6 295 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 IGHMP01871 453 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 MAS1P04201 325 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 CTLA4P16410 223 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 CCR9P51686 369 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 ART1P52961 327 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 FBXW4P57775 412 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 RABEPKQ7Z6M1 372 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 ASB17Q8WXJ9 295 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 MCHR2Q969V1 340 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 NPAS1Q99742 590 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 ZNF275Q9NSD4 429 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 AKAP7Q9P0M2 348 aaPredicted RBP18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 KLHL9Q9P2J3 617 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 ETV7Q9Y603 341 aa18.76■□□□□ 0.59
CCDC88B-203ENST00000359902 GPR171O14626 319 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 TOX3O15405 576 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 AKR7A2O43488 359 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 CDK2P24941 298 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 CLPPQ16740 277 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 ZSCAN2Q7Z7L9 614 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 TMPRSS12Q86WS5 348 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 THAP3Q8WTV1 239 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 FCAMRQ8WWV6 532 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 HRASLSQ9HDD0 168 aa18.75■□□□□ 0.59
CCDC88B-203ENST00000359902 MRPL39Q9NYK5 338 aaKnown RBP18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms