RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZC3H10Q96K80 434 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 SPSB2Q99619 263 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 NAA11Q9BSU3 229 aaPredicted RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 EDEM2Q9BV94 578 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 NMNAT2Q9BZQ4 307 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 SELENOIQ9C0D9 397 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 SLITRK2Q9H156 845 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 MYOZ1Q9NP98 299 aaPredicted RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 MMP26Q9NRE1 261 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 COMMD9Q9P000 198 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 DPP7Q9UHL4 492 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 PLEKHA6Q9Y2H5 1048 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 YBX2Q9Y2T7 364 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 NOP16Q9Y3C1 178 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 ENTPD2Q9Y5L3 495 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 TTLL8A6PVC2 850 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ZNF705EA8MWA4 302 aaPredicted RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 TGM5O43548 720 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 GATCO43716 136 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 PRICKLE3O43900 615 aaPredicted RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 RDH16O75452 317 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ABHD16AO95870 558 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 HLA-AP01891 365 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 AMY2AP04746 511 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 DBIP07108 87 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 FBXO45P0C2W1 286 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 PGAM2P15259 253 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 CXADRP78310 365 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 HGFACQ04756 655 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ALKBH1Q13686 389 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 RAB33AQ14088 237 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ZNF234Q14588 700 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 COL19A1Q14993 1142 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 MLF2Q15773 248 aaPredicted RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 TRMT12Q53H54 448 aaKnown RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 DCST2Q5T1A1 773 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 LPCAT3Q6P1A2 487 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 FIGNL1Q6PIW4 674 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 NRROSQ86YC3 692 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 SLC30A7Q8NEW0 376 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 OR10R2Q8NGX6 335 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 HIST1H2BAQ96A08 127 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ZNF775Q96BV0 537 aaPredicted RBP6.17□□□□□ -1.42
VPS39-202ENST00000348544 CLCC1Q96S66 551 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 LGR4Q9BXB1 951 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 ULBP3Q9BZM4 244 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 SEMA6CQ9H3T2 930 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 CYTL1Q9NRR1 136 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 VSIG4Q9Y279 399 aa6.17□□□□□ -1.42
VPS39-202ENST00000348544 TMEM72A0PK05 275 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 OR4C45A6NMZ5 311 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 C9JQL5 133 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 VEGFDO43915 354 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 DNAJB6O75190 326 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 NDUFB2O95178 105 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 HTR3BO95264 441 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 APEHP13798 732 aaKnown RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 ZNF28P17035 718 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 ZBTB25P24278 435 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 S100PP25815 95 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 CST5P28325 142 aaPredicted RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 SDHAP31040 664 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 HSD17B2P37059 387 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 AKR1C3P42330 323 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 F2RL1P55085 397 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 FOXK1P85037 733 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 DMWDQ09019 674 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 FABP9Q0Z7S8 132 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 PJVKQ0ZLH3 352 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 SMCO1Q147U7 214 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 ODF4Q2M2E3 257 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 ALG11Q2TAA5 492 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 NKAPLQ5M9Q1 402 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 METRNLQ641Q3 311 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 TMEM205Q6UW68 189 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 SLC39A5Q6ZMH5 540 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 PARGQ86W56 976 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 LRRC25Q8N386 305 aaPredicted RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 LILRB2Q8N423 598 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 TMEM106AQ96A25 262 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 MRGPRFQ96AM1 343 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 ZBTB8AQ96BR9 441 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 C14orf79Q96F83 325 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 RRNAD1Q96FB5 475 aaKnown RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 TSSK2Q96PF2 358 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 SLC6A7Q99884 636 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 SLC25A21Q9BQT8 299 aaPredicted RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 PAPOLGQ9BWT3 736 aaKnown RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 POTEKPQ9BYX7 375 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 LAT2Q9GZY6 243 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 TMEM74BQ9NUR3 256 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 UPB1Q9UBR1 384 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 PCDHGA1Q9Y5H4 931 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 TXNL1O43396 289 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 SRPX2O60687 465 aaPredicted RBP6.16□□□□□ -1.42
VPS39-202ENST00000348544 CLN5O75503 358 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 AGR2O95994 175 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 SOD2P04179 222 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 CD14P08571 375 aa6.16□□□□□ -1.42
VPS39-202ENST00000348544 PRF1P14222 555 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms