RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 HS3ST6Q96QI5 342 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 KCNK17Q96T54 332 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 C1QTNF6Q9BXI9 259 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 NELFAQ9H3P2 528 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 NRIP3Q9NQ35 241 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 ARMC1Q9NVT9 282 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 NPAP1Q9NZP6 1156 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 MGAT4BQ9UQ53 548 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 AP4S1Q9Y587 144 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 IER3IP1Q9Y5U9 82 aa13.92□□□□□ -0.18
CCDC28A-201ENST00000332797 ABCA12Q86UK0 2595 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 TEX13CA0A0J9YWL9 993 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 H7C1C5 153 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 XKRYO14609 159 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 ARHGEF9O43307 516 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 DHHO43323 396 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 SLC2A10O95528 541 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 PPP1R3DO95685 299 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 WNT11O96014 354 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 NR2C1P13056 603 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 SDHAP31040 664 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 CAPZA2P47755 286 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 RPS6KA3P51812 740 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 LCN6P62502 163 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 FMODQ06828 376 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 MESTQ5EB52 335 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 FAM122BQ7Z309 247 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 CDC20BQ86Y33 519 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 CLDN22Q8N7P3 220 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 MAGEE2Q8TD90 523 aaPredicted RBP13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 DUS3LQ96G46 650 aaKnown RBP13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 BOD1Q96IK1 185 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 RAB3IPQ96QF0 476 aaPredicted RBP13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 FOXB1Q99853 325 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 ALG12Q9BV10 488 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 IFT27Q9BW83 186 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 DGCR6LQ9BY27 220 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 ESRP2Q9H6T0 727 aaKnown RBP13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 EGLN3Q9H6Z9 239 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 PDP1Q9P0J1 537 aaPredicted RBP13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 CDH10Q9Y6N8 788 aa13.91□□□□□ -0.18
CCDC28A-201ENST00000332797 ARRDC5A6NEK1 342 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 M0R1B8 84 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 LOXP28300 417 aaPredicted RBP13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 ZNF84P51523 738 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 NR1H2P55055 460 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 ACTR3P61158 418 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 KRR1Q13601 381 aaKnown RBP13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 ATP6AP1Q15904 470 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 GPR139Q6DWJ6 353 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 RASSF6Q6ZTQ3 369 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 HS3ST5Q8IZT8 346 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 OR52L1Q8NGH7 329 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 NSMAFQ92636 917 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 LURAP1Q96LR2 239 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 ERMAPQ96PL5 475 aaPredicted RBP13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 RBP7Q96R05 134 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 FEVQ99581 238 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 NIPSNAP1Q9BPW8 284 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 OBP2BQ9NPH6 170 aa13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 MAGED1Q9Y5V3 778 aaPredicted RBP13.9□□□□□ -0.18
CCDC28A-201ENST00000332797 ALPK2Q86TB3 2170 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 ARPC4-TTLL3A0A0A6YYG9 625 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 SOCS2O14508 198 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 SOX14O95416 240 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 FCGR1AP12314 374 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 GSTM3P21266 225 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 FASP25445 335 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 BSPH1Q075Z2 132 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 CLEC12AQ5QGZ9 265 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 NCMAPQ5T1S8 102 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 C10orf128Q5T292 105 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 RPL13AP3Q6NVV1 102 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 KLHL17Q6TDP4 642 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 PYDC1Q8WXC3 89 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 HTRA1Q92743 480 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 NMD3Q96D46 503 aaKnown RBP13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 PLA2G12AQ9BZM1 189 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 SMURF2Q9HAU4 748 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 NTN4Q9HB63 628 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 TBC1D23Q9NUY8 699 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 TMEM38BQ9NVV0 291 aa13.89□□□□□ -0.19
CCDC28A-201ENST00000332797 IGKV1D-43A0A0B4J1Z2 117 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 A0A1W2PPR1 153 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 PRSS37A4D1T9 235 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 DPRXA6NFQ7 191 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 TXNDC12O95881 172 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 CD3EP07766 207 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 HOXB1P14653 301 aaPredicted RBP13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 PRKACGP22612 351 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 ARHGDIAP52565 204 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 ZNF133P52736 654 aaPredicted RBP13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 ZSCAN26Q16670 478 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 THEM4Q5T1C6 240 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 C1QTNF12Q5T7M4 302 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 SHQ1Q6PI26 577 aaKnown RBP13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 ZNF627Q7L945 461 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 FNDC8Q8TC99 324 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 LRTOMTQ8WZ04 291 aa13.88□□□□□ -0.19
CCDC28A-201ENST00000332797 NRGNQ92686 78 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms