RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ZNF440Q8IYI8 595 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 RASD2Q96D21 266 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 Q96M85 177 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 SERINC2Q96SA4 455 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 ZFYVE21Q9BQ24 234 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 SLC25A21Q9BQT8 299 aaPredicted RBP14.1□□□□□ -0.15
SHH-201ENST00000297261 CNTNAP3Q9BZ76 1288 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 PRRG4Q9BZD6 226 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 ZNF337Q9Y3M9 751 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 CKAP5Q14008 2032 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 CACNA1IQ9P0X4 2223 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 TMEM269A0A1B0GVZ9 245 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 TCRBV16S1A1N1A0A5B0 115 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 ARRDC5A6NEK1 342 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 KDM4EB2RXH2 506 aaPredicted RBP14.1□□□□□ -0.15
SHH-201ENST00000297261 RAD51DO75771 328 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 APBB3O95704 486 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 WNT1P04628 370 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 PGCP20142 388 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 HSD11B2P80365 405 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 PLCXD2Q0VAA5 305 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 SSX2Q16385 188 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 ZNF628Q5EBL2 1059 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 EID2Q8N6I1 236 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 OR51T1Q8NGJ9 327 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 SMIM4Q8WVI0 70 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 TGM7Q96PF1 710 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 MS4A7Q9GZW8 240 aaPredicted RBP14.1□□□□□ -0.15
SHH-201ENST00000297261 ADAM29Q9UKF5 820 aa14.1□□□□□ -0.15
SHH-201ENST00000297261 CCDC163A0A0D9SF12 145 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 A0A1W2PS29 197 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 K7EPK0 472 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 DNAJB6O75190 326 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 CLUP10909 449 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 EPXP11678 715 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 HTR2CP28335 458 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 RAB5CP51148 216 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 SNU13P55769 128 aaKnown RBP14.09□□□□□ -0.15
SHH-201ENST00000297261 GLO1Q04760 184 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 ZNF704Q6ZNC4 412 aaPredicted RBP14.09□□□□□ -0.15
SHH-201ENST00000297261 Q6ZTK2 550 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 ABI3BPQ7Z7G0 1075 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 C9orf62Q8N4C0 152 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 FAM71E2Q8N5Q1 922 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 MRGPRX1Q96LB2 322 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 TXNDC12O95881 172 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 POU2F2P09086 479 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 CD22P20273 847 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 ARRB1P49407 418 aaPredicted RBP14.09□□□□□ -0.15
SHH-201ENST00000297261 MEX3BQ6ZN04 569 aaKnown RBP14.09□□□□□ -0.15
SHH-201ENST00000297261 CDH26Q8IXH8 852 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 OR1M1Q8NGA1 313 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 OR52H1Q8NGJ2 320 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 HAVCR2Q8TDQ0 301 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 CPNE7Q9UBL6 633 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 IFITM5A6NNB3 132 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 SURF4O15260 269 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 DPM1O60762 260 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 CSRP3P50461 194 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 NDUFA6P56556 154 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 RPL19P84098 196 aaKnown RBP14.09□□□□□ -0.15
SHH-201ENST00000297261 C19orf57Q0VDD7 668 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 ALKBH1Q13686 389 aaKnown RBP14.09□□□□□ -0.15
SHH-201ENST00000297261 KIR2DS3Q14952 304 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 OR7A5Q15622 319 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 SIRT6Q8N6T7 355 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 PITHD1Q9GZP4 211 aaPredicted RBP14.09□□□□□ -0.15
SHH-201ENST00000297261 LUZP4Q9P127 313 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 ADAM18Q9Y3Q7 739 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 CCDC88CQ9P219 2028 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 ATF1P18846 271 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 CCNOP22674 350 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 RPS27P42677 84 aaKnown RBP14.09□□□□□ -0.15
SHH-201ENST00000297261 SFRP5Q5T4F7 317 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 OR10K2Q6IF99 312 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 BEND4Q6ZU67 534 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 RASGRP3Q8IV61 690 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 KCNRGQ8N5I3 272 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 TMEM234Q8WY98 164 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 SGPP1Q9BX95 441 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 ANKRD19PQ9H560 264 aa14.09□□□□□ -0.15
SHH-201ENST00000297261 MEIKINA0A087WXM9 373 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 TRIM77I1YAP6 450 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 SLC6A1P30531 599 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 CSNK1G2P78368 415 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 ACY1Q03154 408 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 LAIR1Q6GTX8 287 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 ADGRG3Q86Y34 549 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 LINC00615Q96LM1 132 aaPredicted RBP14.08□□□□□ -0.15
SHH-201ENST00000297261 TSPAN10Q9H1Z9 355 aaPredicted RBP14.08□□□□□ -0.15
SHH-201ENST00000297261 B3GAT2Q9NPZ5 323 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 CMC2Q9NRP2 79 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 TAS2R5Q9NYW4 299 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 CGGBP1Q9UFW8 167 aaPredicted RBP14.08□□□□□ -0.15
SHH-201ENST00000297261 ZNF175Q9Y473 711 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 URGCP-MRPS24S4R325 110 aa14.08□□□□□ -0.15
SHH-201ENST00000297261 CBX7O95931 251 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 C1QCP02747 245 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 RRASP10301 218 aa14.08□□□□□ -0.16
SHH-201ENST00000297261 DRD3P35462 400 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms