RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ZBED5Q49AG3 693 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 ARMC4Q5T2S8 1044 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 CYP2R1Q6VVX0 501 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 WFDC8Q8IUA0 241 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 OR6N1Q8NGY5 312 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 ASB10Q8WXI3 467 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 BCL2L2Q92843 193 aaPredicted RBP16.02■□□□□ 0.16
CLN3-259ENST00000637551 CCDC124Q96CT7 223 aaKnown RBP16.02■□□□□ 0.16
CLN3-259ENST00000637551 ZC3HAV1LQ96H79 300 aaKnown RBP16.02■□□□□ 0.16
CLN3-259ENST00000637551 ULBP2Q9BZM5 246 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 LRMDAQ9H2I8 198 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 YY1AP1Q9H869 796 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 GLTPQ9NZD2 209 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 CRNNQ9UBG3 495 aaPredicted RBP16.02■□□□□ 0.16
CLN3-259ENST00000637551 TMCC3Q9ULS5 477 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 RNF115Q9Y4L5 304 aa16.02■□□□□ 0.16
CLN3-259ENST00000637551 FBN3Q75N90 2809 aa16.02■□□□□ 0.15
CLN3-259ENST00000637551 TRBV4-1A0A0J9YWV2 114 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 MCIDASD6RGH6 385 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 PIP5K1CO60331 668 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 CD3EP07766 207 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 MAKP20794 623 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 AQP2P41181 271 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 SPIBQ01892 262 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 FLOT2Q14254 428 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 ACKR1Q16570 336 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 CEACAM16Q2WEN9 425 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 TBRG1Q3YBR2 411 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 GPR139Q6DWJ6 353 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 RPL13AP3Q6NVV1 102 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 LINGO2Q7L985 606 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 WDR31Q8NA23 367 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 LRRC75AQ8NAA5 344 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 NOXO1Q8NFA2 376 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 PIK3IP1Q96FE7 263 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 PLPPR2Q96GM1 343 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 TXNDC15Q96J42 360 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 ST6GALNAC2Q9UJ37 374 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 SIGLEC7Q9Y286 467 aa16.01■□□□□ 0.15
CLN3-259ENST00000637551 HEATR1Q9H583 2144 aaKnown RBP16.01■□□□□ 0.15
CLN3-259ENST00000637551 ARRDC5A6NEK1 342 aa16■□□□□ 0.15
CLN3-259ENST00000637551 GSC2O15499 205 aa16■□□□□ 0.15
CLN3-259ENST00000637551 NDUFB2O95178 105 aa16■□□□□ 0.15
CLN3-259ENST00000637551 RAF1P04049 648 aa16■□□□□ 0.15
CLN3-259ENST00000637551 CD14P08571 375 aa16■□□□□ 0.15
CLN3-259ENST00000637551 ACADSP16219 412 aa16■□□□□ 0.15
CLN3-259ENST00000637551 RRM2P31350 389 aa16■□□□□ 0.15
CLN3-259ENST00000637551 KRTAP10-9P60411 292 aa16■□□□□ 0.15
CLN3-259ENST00000637551 UBE2NP61088 152 aaKnown RBP16■□□□□ 0.15
CLN3-259ENST00000637551 RPL27P61353 136 aaKnown RBP16■□□□□ 0.15
CLN3-259ENST00000637551 TSC22D1Q15714 1073 aa16■□□□□ 0.15
CLN3-259ENST00000637551 C10orf128Q5T292 105 aa16■□□□□ 0.15
CLN3-259ENST00000637551 C1orf94Q6P1W5 598 aa16■□□□□ 0.15
CLN3-259ENST00000637551 NANOS1Q8WY41 292 aaKnown RBP16■□□□□ 0.15
CLN3-259ENST00000637551 ALPK1Q96QP1 1244 aa16■□□□□ 0.15
CLN3-259ENST00000637551 NELFAQ9H3P2 528 aa16■□□□□ 0.15
CLN3-259ENST00000637551 AURKCQ9UQB9 309 aa16■□□□□ 0.15
CLN3-259ENST00000637551 LYVE1Q9Y5Y7 322 aa16■□□□□ 0.15
CLN3-259ENST00000637551 V9GYQ6 96 aa16■□□□□ 0.15
CLN3-259ENST00000637551 DSCAMO60469 2012 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 TCRBV3S1A0A5B6 114 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 DHRS12A0PJE2 317 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 CDC42EP2O14613 210 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 PTP4A3O75365 173 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 IGKV3-15P01624 115 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 FOXG1P55316 489 aaPredicted RBP15.99■□□□□ 0.15
CLN3-259ENST00000637551 CAMK2DQ13557 499 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 THEM4Q5T1C6 240 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 OR2T5Q6IEZ7 315 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 TBPL2Q6SJ96 375 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 ZNF704Q6ZNC4 412 aaPredicted RBP15.99■□□□□ 0.15
CLN3-259ENST00000637551 ZNF611Q8N823 705 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 IL17RDQ8NFM7 739 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 OR2T29Q8NH02 315 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 CLPTM1LQ96KA5 538 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 KCNK17Q96T54 332 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 FOXB1Q99853 325 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 EMC6Q9BV81 110 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 CADM1Q9BY67 442 aaKnown RBP15.99■□□□□ 0.15
CLN3-259ENST00000637551 GRIP2Q9C0E4 1043 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 POMPQ9Y244 141 aa15.99■□□□□ 0.15
CLN3-259ENST00000637551 M0R3G1 203 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 HS3ST1O14792 307 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 IGLV1-44P01699 117 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 F13BP05160 661 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 FUT4P22083 530 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 DNASE1P24855 282 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 ARR3P36575 388 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 GPR4P46093 362 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 CLRN1P58418 232 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 LSM11P83369 360 aaKnown RBP eCLIP15.98■□□□□ 0.15
CLN3-259ENST00000637551 ARF1P84077 181 aaKnown RBP15.98■□□□□ 0.15
CLN3-259ENST00000637551 BSPH1Q075Z2 132 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 SEC23BQ15437 767 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 DPY19L2P2Q6ZN68 376 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 ADCK1Q86TW2 530 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 ADGRG5Q8IZF4 528 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 ARIH2OSQ8N7S6 290 aa15.98■□□□□ 0.15
CLN3-259ENST00000637551 PAPD5Q8NDF8 572 aaKnown RBP15.98■□□□□ 0.15
CLN3-259ENST00000637551 OR13C2Q8NGS9 318 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms