RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 NPIPA1Q9UND3 350 aa12.73□□□□□ -0.37
USP39-220ENST00000613444 ZZEF1O43149 2961 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 CHD8Q9HCK8 2581 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 A6NIZ1 184 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 FAM171A2A8MVW0 826 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 CXCL13O43927 109 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 TRMUO75648 421 aaKnown RBP12.72□□□□□ -0.37
USP39-220ENST00000613444 RENP00797 406 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 TFP02787 698 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 BIDP55957 195 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 RAP1BP61224 184 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 RAP1AP62834 184 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 SLC17A1Q14916 467 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 PON3Q15166 354 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 FAM205BPQ63HN1 556 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 RBMXL3Q8N7X1 1067 aaKnown RBP12.72□□□□□ -0.37
USP39-220ENST00000613444 ZNF485Q8NCK3 441 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 PROKR2Q8NFJ6 384 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 NEIL3Q8TAT5 605 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 CRELD1Q96HD1 420 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 NAA11Q9BSU3 229 aaPredicted RBP12.72□□□□□ -0.37
USP39-220ENST00000613444 ALG12Q9BV10 488 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 EMC6Q9BV81 110 aa12.72□□□□□ -0.37
USP39-220ENST00000613444 SRA1Q9HD15 236 aaKnown RBP12.72□□□□□ -0.37
USP39-220ENST00000613444 IGLV1-36A0A0B4J1U3 117 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 VAMP5O95183 116 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 MRPL3P09001 348 aaKnown RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 CTLA4P16410 223 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 PLA2G5P39877 138 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 EIF1AXP47813 144 aaKnown RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 LGALS3BPQ08380 585 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 ZNF169Q14929 603 aaPredicted RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 BCL2A1Q16548 175 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 TBR1Q16650 682 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 VASNQ6EMK4 673 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 OR2T4Q8NH00 348 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 SMAP2Q8WU79 429 aaPredicted RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 ABTB1Q969K4 478 aaPredicted RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 FAM122AQ96E09 287 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 ZNF845Q96IR2 970 aaPredicted RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 ERVK13-1Q9NX77 482 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 NDUFA13Q9P0J0 144 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 SPRR3Q9UBC9 169 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 B9D1Q9UPM9 204 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 MOKQ9UQ07 419 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 ERGIC3Q9Y282 383 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 EXOSC1Q9Y3B2 195 aaKnown RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 FKBP7Q9Y680 259 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 PHF3Q92576 2039 aaKnown RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 TMEM129A0AVI4 362 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 TAF4O00268 1085 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 WISP2O76076 250 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 ACTL6AO96019 429 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 IGHG3P01860 377 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 ZNF43P17038 809 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 TTKP33981 857 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 CD79BP40259 229 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 ABLIM2Q6H8Q1 611 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 CREB3L2Q70SY1 520 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 LHFPL3Q86UP9 236 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 ZIC4Q8N9L1 334 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 OR6X1Q8NH79 312 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 SNRNP27Q8WVK2 155 aaKnown RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 NMD3Q96D46 503 aaKnown RBP12.71□□□□□ -0.37
USP39-220ENST00000613444 COG8Q96MW5 612 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 TAAR6Q96RI8 345 aa12.71□□□□□ -0.37
USP39-220ENST00000613444 SLC35F4A4IF30 521 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ZNF716A6NP11 495 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 C12orf71A8MTZ7 269 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 PGA4P0DJD7 388 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 PGA3P0DJD8 388 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ZNF24P17028 368 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 MYL12AP19105 171 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 PSMB9P28065 219 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ATP6V1E1P36543 226 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 POU4F2Q12837 409 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ETFDHQ16134 617 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 LCN1P1Q5VSP4 162 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ZNF367Q7RTV3 350 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ACBD7Q8N6N7 88 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 POMGNT2Q8NAT1 580 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ZNF511Q8NB15 262 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 SYT14Q8NB59 555 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 OR9K2Q8NGE7 335 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 OR6K6Q8NGW6 343 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 ZHX1-C8orf76Q96EF9 292 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 MND1Q9BWT6 205 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 PCDHGB7Q9Y5F8 929 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 TRGV5A0A0B4J1U4 118 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 IGKV1D-43A0A0B4J1Z2 117 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 MKRN2OSH3BPM6 223 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 AHCYL1O43865 530 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 SELENOFO60613 162 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 TMPRSS3P57727 454 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 FMODQ06828 376 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 C1DQ13901 141 aaKnown RBP12.7□□□□□ -0.38
USP39-220ENST00000613444 TIGD6Q17RP2 521 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 OR2G6Q5TZ20 316 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 SIAH3Q8IW03 269 aa12.7□□□□□ -0.38
USP39-220ENST00000613444 TIGD4Q8IY51 512 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms