RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 GSSP48637 474 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 SH3BGRP55822 239 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 SMIM11AP58511 58 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 PPP1R8Q12972 351 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 ZBED5Q49AG3 693 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 C1orf94Q6P1W5 598 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 PGBD2Q6P3X8 592 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 GPR137CQ8N3F9 429 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 PAPD5Q8NDF8 572 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 IGFBPL1Q8WX77 278 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 GPX7Q96SL4 187 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 KCNK17Q96T54 332 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 TRIM15Q9C019 465 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 GLTPQ9NZD2 209 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF346Q9UL40 294 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 IGKV1D-43A0A0B4J1Z2 117 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF726A6NNF4 738 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF99A8MXY4 864 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 CENPBD1B2RD01 187 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 SEC14L2O76054 403 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 ACADSP16219 412 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 CDH2P19022 906 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 CSNK1A1P48729 337 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 TGFBR3Q03167 851 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 CHRNB3Q05901 458 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 BSPH1Q075Z2 132 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 FAM98BQ52LJ0 330 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 HMBOX1Q6NT76 420 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 ANKRD16Q6P6B7 361 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 NOXO1Q8NFA2 376 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 POP5Q969H6 163 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF566Q969W8 418 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 CHID1Q9BWS9 393 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 AMDHD2Q9Y303 409 aa17.04■□□□□ 0.32
SHKBP1-221ENST00000599833 HEATR1Q9H583 2144 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 A0A1W2PRG6 482 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 DHRS12A0PJE2 317 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 KRT33AO76009 404 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 KRT36O76013 467 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 FPR3P25089 353 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 DAP3P51398 398 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 NR1H2P55055 460 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 CTXN1P60606 82 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 RPL27P61353 136 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 FLOT2Q14254 428 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 C1QTNF12Q5T7M4 302 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 OR2T5Q6IEZ7 315 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 SSX8Q7RTT4 187 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 CLDN22Q8N7P3 220 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 OR9Q2Q8NGE9 314 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 OR2T29Q8NH02 315 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 MCHR2Q969V1 340 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 RSRC1Q96IZ7 334 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 LRGUKQ96M69 825 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF75AQ96N20 296 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 ULBP2Q9BZM5 246 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 NOX3Q9HBY0 568 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 NRIP3Q9NQ35 241 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 B3GNT2Q9NY97 397 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 CRNNQ9UBG3 495 aaPredicted RBP17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 ADAM18Q9Y3Q7 739 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 UGT2A1Q9Y4X1 527 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 CREBBPQ92793 2442 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 DSCAMO60469 2012 aa17.03■□□□□ 0.32
SHKBP1-221ENST00000599833 A0A096LPE4 126 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 A0A1W2PPZ6 126 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 TNFRSF11BO00300 401 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 IGHG1P01857 330 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 RASSF2P50749 326 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 PRPS1P60891 318 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 TUBA1BP68363 451 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 TUBA4AP68366 448 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 CBX1P83916 185 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 SPOCK1Q08629 439 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 TAF11Q15544 211 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 ALKBH2Q6NS38 261 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 PAMR1Q6UXH9 720 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF704Q6ZNC4 412 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 TUBA1AQ71U36 451 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 TMEM179BQ7Z7N9 219 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 CDH24Q86UP0 819 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 MYPOPQ86VE0 399 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 CDK20Q8IZL9 346 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 OR6N1Q8NGY5 312 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 NEUROG1Q92886 237 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 MUCL1Q96DR8 90 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 KATNB1Q9BVA0 655 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 MMADHCQ9H3L0 296 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 OBP2BQ9NPH6 170 aa17.02■□□□□ 0.32
SHKBP1-221ENST00000599833 PRRC2AP48634 2157 aaKnown RBP17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 UNC119BA6NIH7 251 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 SHISA9B4DS77 424 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 ATE1O95260 518 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 IGLV1-44P01699 117 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 CD14P08571 375 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 QDPRP09417 244 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 HOXB1P14653 301 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 ERFP50548 548 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 IST1P53990 364 aa17.01■□□□□ 0.31
SHKBP1-221ENST00000599833 ERVK-25P63136 954 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms