RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 LRRC23Q53EV4 343 aaPredicted RBP13.05□□□□□ -0.32
LIG1-215ENST00000597901 PIWIL3Q7Z3Z3 882 aaKnown RBP13.05□□□□□ -0.32
LIG1-215ENST00000597901 PRIMA1Q86XR5 153 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 SKA3Q8IX90 412 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 PFN4Q8NHR9 129 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 C10orf105Q8TEF2 133 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 TMEM239Q8WW34 195 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 ZNF566Q969W8 418 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 SGTBQ96EQ0 304 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 MS4A3Q96HJ5 214 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 TPD52L3Q96J77 140 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 TNFRSF13CQ96RJ3 184 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 DOK1Q99704 481 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 VRK1Q99986 396 aaPredicted RBP13.05□□□□□ -0.32
LIG1-215ENST00000597901 HOPXQ9BPY8 73 aaPredicted RBP13.05□□□□□ -0.32
LIG1-215ENST00000597901 PLK3Q9H4B4 646 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 ZNF442Q9H7R0 627 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 EFCAB1Q9HAE3 211 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 NOX3Q9HBY0 568 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 C20orf141Q9NUB4 165 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 ZNF224Q9NZL3 707 aa13.05□□□□□ -0.32
LIG1-215ENST00000597901 GMPR2Q9P2T1 348 aaKnown RBP13.05□□□□□ -0.32
LIG1-215ENST00000597901 DHHO43323 396 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 TLX2O43763 284 aaPredicted RBP13.04□□□□□ -0.32
LIG1-215ENST00000597901 CD5LO43866 347 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 CRLF1O75462 422 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 OR7A10O76100 309 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 IGF2P01344 180 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 F13BP05160 661 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 QDPRP09417 244 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 ZNF35P13682 527 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 SLC25A16P16260 332 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 ZNF14P17017 642 aaPredicted RBP13.04□□□□□ -0.32
LIG1-215ENST00000597901 NR4A1P22736 598 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 AQP2P41181 271 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 GIPRP48546 466 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 LIPEQ05469 1076 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 RPL18Q07020 188 aaKnown RBP13.04□□□□□ -0.32
LIG1-215ENST00000597901 LOXL1Q08397 574 aaPredicted RBP13.04□□□□□ -0.32
LIG1-215ENST00000597901 DAG1Q14118 895 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 MELKQ14680 651 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 LAPTM4AQ15012 233 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 NANOGNBQ7Z5D8 188 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 FGFBP3Q8TAT2 258 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 LIPHQ8WWY8 451 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 SORCS2Q96PQ0 1159 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 DENND2DQ9H6A0 471 aaPredicted RBP13.04□□□□□ -0.32
LIG1-215ENST00000597901 YAE1D1Q9NRH1 226 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 A4GNTQ9UNA3 340 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 MED31Q9Y3C7 131 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 NAV3Q8IVL0 2385 aa13.04□□□□□ -0.32
LIG1-215ENST00000597901 A0A1W2PRG6 482 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 ATP8B1O43520 1251 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 CSF3P09919 207 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 PATE4P0C8F1 98 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 PGA4P0DJD7 388 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 PGA3P0DJD8 388 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 OR8G3PP0DMU2 310 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 PTDSS1P48651 473 aaKnown RBP13.03□□□□□ -0.32
LIG1-215ENST00000597901 RUNX1T1Q06455 604 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 ST3GAL3Q11203 375 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 HIST3H3Q16695 136 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 SPATA21Q7Z572 469 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 ARPINQ7Z6K5 226 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 TREML1Q86YW5 311 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 SLC22A24Q8N4F4 322 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 ANKS4BQ8N8V4 417 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 MOSPD2Q8NHP6 518 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 LZICQ8WZA0 190 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 MCHR2Q969V1 340 aa13.03□□□□□ -0.32
LIG1-215ENST00000597901 MRPL13Q9BYD1 178 aaKnown RBP13.03□□□□□ -0.32
LIG1-215ENST00000597901 FBXO9Q9UK97 447 aaPredicted RBP13.03□□□□□ -0.32
LIG1-215ENST00000597901 HEATR1Q9H583 2144 aaKnown RBP13.03□□□□□ -0.32
LIG1-215ENST00000597901 HIVEP2P31629 2446 aa13.02□□□□□ -0.32
LIG1-215ENST00000597901 SH3PXD2BA1X283 911 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 hCG_2039718K7EN88 272 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 UBL3O95164 117 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 IGHG1P01857 330 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 TSPAN19P0C672 248 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 FUT4P22083 530 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 IFNA8P32881 189 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 YAP1P46937 504 aaKnown RBP13.02□□□□□ -0.33
LIG1-215ENST00000597901 PDLIM4P50479 330 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 CLRN1P58418 232 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 LSM11P83369 360 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIG1-215ENST00000597901 SNTB2Q13425 540 aaKnown RBP13.02□□□□□ -0.33
LIG1-215ENST00000597901 RAB39AQ14964 217 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 TMEM249Q2WGJ8 235 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 KRT80Q6KB66 452 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 C8orf82Q6P1X6 216 aaPredicted RBP13.02□□□□□ -0.33
LIG1-215ENST00000597901 ZCCHC24Q8N2G6 241 aaKnown RBP13.02□□□□□ -0.33
LIG1-215ENST00000597901 SVOPLQ8N434 492 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 SYT14Q8NB59 555 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 FOXN4Q96NZ1 517 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 ZNF347Q96SE7 839 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 SH3GL3Q99963 347 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 ELAC2Q9BQ52 826 aaKnown RBP13.02□□□□□ -0.33
LIG1-215ENST00000597901 RAB1BQ9H0U4 201 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 INIPQ9NRY2 104 aa13.02□□□□□ -0.33
LIG1-215ENST00000597901 TMEM38BQ9NVV0 291 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms