RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 PIK3IP1Q96FE7 263 aa22.6■■□□□ 1.21
TRIM28-204ENST00000594806 MRPL13Q9BYD1 178 aaKnown RBP22.6■■□□□ 1.21
TRIM28-204ENST00000594806 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP22.59■■□□□ 1.21
TRIM28-204ENST00000594806 UNC119BA6NIH7 251 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 SIAH2O43255 324 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 ENTPD5O75356 428 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 CDH2P19022 906 aaPredicted RBP22.59■■□□□ 1.21
TRIM28-204ENST00000594806 CLRN1P58418 232 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 TBRG1Q3YBR2 411 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 PHYHD1Q5SRE7 291 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 ZNF627Q7L945 461 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 CDC20BQ86Y33 519 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 WDR31Q8NA23 367 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 PAPD5Q8NDF8 572 aaKnown RBP22.59■■□□□ 1.21
TRIM28-204ENST00000594806 OR4C15Q8NGM1 316 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 GNPDA2Q8TDQ7 276 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 RSRC1Q96IZ7 334 aaKnown RBP22.59■■□□□ 1.21
TRIM28-204ENST00000594806 CCM2LQ9NUG4 571 aaPredicted RBP22.59■■□□□ 1.21
TRIM28-204ENST00000594806 POFUT2Q9Y2G5 429 aa22.59■■□□□ 1.21
TRIM28-204ENST00000594806 SAMHD1Q9Y3Z3 626 aaKnown RBP22.59■■□□□ 1.21
TRIM28-204ENST00000594806 ARPC4-TTLL3A0A0A6YYG9 625 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 A6NIZ1 184 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 TRMUO75648 421 aaKnown RBP22.58■■□□□ 1.21
TRIM28-204ENST00000594806 CST1P01037 141 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 CD14P08571 375 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 RPL4P36578 427 aaKnown RBP22.58■■□□□ 1.21
TRIM28-204ENST00000594806 RAP1BP61224 184 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 RAP1AP62834 184 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 ARF1P84077 181 aaKnown RBP22.58■■□□□ 1.21
TRIM28-204ENST00000594806 HIST3H3Q16695 136 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 KLHL17Q6TDP4 642 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 SEZ6L2Q6UXD5 910 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 OR52N5Q8NH56 324 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 PLPPR2Q96GM1 343 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 GPX7Q96SL4 187 aaPredicted RBP22.58■■□□□ 1.21
TRIM28-204ENST00000594806 ALG12Q9BV10 488 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 DCHS2Q6V1P9 2916 aa22.58■■□□□ 1.21
TRIM28-204ENST00000594806 APCP25054 2843 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 CYSRT1A8MQ03 144 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 CIB2O75838 187 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 CCNB2O95067 398 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 LOXP28300 417 aaPredicted RBP22.57■■□□□ 1.2
TRIM28-204ENST00000594806 GSSP48637 474 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 KRTAP10-9P60411 292 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 UBE2NP61088 152 aaKnown RBP22.57■■□□□ 1.2
TRIM28-204ENST00000594806 TSPAN31Q12999 210 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 NCMAPQ5T1S8 102 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 C1orf146Q5VVC0 180 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 ALKBH2Q6NS38 261 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 WDFY1Q8IWB7 410 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 NOXO1Q8NFA2 376 aa22.57■■□□□ 1.2
TRIM28-204ENST00000594806 ZNF346Q9UL40 294 aaKnown RBP22.57■■□□□ 1.2
TRIM28-204ENST00000594806 MGRN1O60291 552 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 ZNF133P52736 654 aaPredicted RBP22.56■■□□□ 1.2
TRIM28-204ENST00000594806 MICAQ29983 383 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 GPR139Q6DWJ6 353 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 PGBD2Q6P3X8 592 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 LRFN4Q6PJG9 635 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 SMARCD3Q6STE5 483 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 ARIH2OSQ8N7S6 290 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 ZNF837Q96EG3 531 aaPredicted RBP22.56■■□□□ 1.2
TRIM28-204ENST00000594806 FOXB1Q99853 325 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 TMEM204Q9BSN7 226 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 KATNB1Q9BVA0 655 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 SMURF2Q9HAU4 748 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 GRHPRQ9UBQ7 328 aa22.56■■□□□ 1.2
TRIM28-204ENST00000594806 GNGT2O14610 69 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 DHHO43323 396 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 AHCYL1O43865 530 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 FKBP6O75344 327 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 CD3EP07766 207 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 QDPRP09417 244 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 APEHP13798 732 aaKnown RBP22.55■■□□□ 1.2
TRIM28-204ENST00000594806 PTAFRP25105 342 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 ACVR1BP36896 505 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 TOP3AQ13472 1001 aaPredicted RBP22.55■■□□□ 1.2
TRIM28-204ENST00000594806 HIKESHIQ53FT3 197 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 RPL13AP3Q6NVV1 102 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 TMEM108Q6UXF1 575 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 DPY19L2P2Q6ZN68 376 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 FAM169BQ8N8A8 192 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 ZNF519Q8TB69 540 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 MCHR2Q969V1 340 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 TSPAN32Q96QS1 320 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 RBP7Q96R05 134 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 KCNK17Q96T54 332 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 GPA33Q99795 319 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 NELFAQ9H3P2 528 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 PLEKHF2Q9H8W4 249 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 NRIP3Q9NQ35 241 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 ZKSCAN7Q9P0L1 754 aaPredicted RBP22.55■■□□□ 1.2
TRIM28-204ENST00000594806 MGAT4BQ9UQ53 548 aa22.55■■□□□ 1.2
TRIM28-204ENST00000594806 HEATR1Q9H583 2144 aaKnown RBP22.54■■□□□ 1.2
TRIM28-204ENST00000594806 ZNF26P17031 533 aaPredicted RBP22.54■■□□□ 1.2
TRIM28-204ENST00000594806 RUNX1T1Q06455 604 aa22.54■■□□□ 1.2
TRIM28-204ENST00000594806 RFX4Q33E94 735 aa22.54■■□□□ 1.2
TRIM28-204ENST00000594806 C3orf36Q3SXR2 165 aa22.54■■□□□ 1.2
TRIM28-204ENST00000594806 NRN1LQ496H8 165 aa22.54■■□□□ 1.2
TRIM28-204ENST00000594806 THEM4Q5T1C6 240 aa22.54■■□□□ 1.2
TRIM28-204ENST00000594806 ZNF770Q6IQ21 691 aaPredicted RBP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms