RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TRAV27A0A087WT01 109 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 A0A096LPE4 126 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 ARPC4-TTLL3A0A0A6YYG9 625 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 A0A1W2PPZ6 126 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 AQP12BA6NM10 295 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 M0R1B8 84 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 CDC42EP2O14613 210 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 RAF1P04049 648 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 NR2C1P13056 603 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 ZNF83P51522 516 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 HMGA2P52926 109 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 SEC23BQ15437 767 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 ARMC4Q5T2S8 1044 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 ADAM5Q6NVV9 412 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 PAMR1Q6UXH9 720 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 ZNF627Q7L945 461 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 MEX3DQ86XN8 651 aaKnown RBP13.15□□□□□ -0.3
UPF1-202ENST00000594243 WDFY1Q8IWB7 410 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 AQP12AQ8IXF9 295 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 DEPDC4Q8N2C3 294 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 LINC00471Q8N535 108 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 OR13C2Q8NGS9 318 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 FUZQ9BT04 418 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 C1QTNF6Q9BXI9 259 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 MRPL13Q9BYD1 178 aaKnown RBP13.15□□□□□ -0.3
UPF1-202ENST00000594243 MMADHCQ9H3L0 296 aaPredicted RBP13.15□□□□□ -0.3
UPF1-202ENST00000594243 UBTD1Q9HAC8 227 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 NPAP1Q9NZP6 1156 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 ZNF346Q9UL40 294 aaKnown RBP13.15□□□□□ -0.3
UPF1-202ENST00000594243 FREM1Q5H8C1 2179 aa13.15□□□□□ -0.3
UPF1-202ENST00000594243 TEP1Q99973 2627 aaKnown RBP13.15□□□□□ -0.3
UPF1-202ENST00000594243 TNFRSF11BO00300 401 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 OR10H3O60404 316 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 ENTPD5O75356 428 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 PTP4A3O75365 173 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 TRMUO75648 421 aaKnown RBP13.14□□□□□ -0.31
UPF1-202ENST00000594243 PLAUP00749 431 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 IGHMP01871 453 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 QDPRP09417 244 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 RAP2AP10114 183 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 RPL4P36578 427 aaKnown RBP13.14□□□□□ -0.31
UPF1-202ENST00000594243 LIMS1P48059 325 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 IST1P53990 364 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 RPL27P61353 136 aaKnown RBP13.14□□□□□ -0.31
UPF1-202ENST00000594243 FHL1Q13642 323 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 FLOT2Q14254 428 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 HIST3H3Q16695 136 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 FAM205BPQ63HN1 556 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 C20orf204Q6ZNR8 217 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 ZER1Q7Z7L7 766 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 LRRC75AQ8NAA5 344 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 FNDC8Q8TC99 324 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 FOXB1Q99853 325 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 CADM1Q9BY67 442 aaKnown RBP13.14□□□□□ -0.31
UPF1-202ENST00000594243 ITGB1BP2Q9UKP3 347 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 SIGLEC7Q9Y286 467 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 TACC2O95359 2948 aa13.14□□□□□ -0.31
UPF1-202ENST00000594243 UNC119BA6NIH7 251 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 A6NIZ1 184 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 ABCD4O14678 606 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 DHHO43323 396 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 NDUFB2O95178 105 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 CD40P25942 277 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 ACVR1BP36896 505 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 ZNF84P51523 738 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 RAP1BP61224 184 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 RAP1AP62834 184 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 RUNX1T1Q06455 604 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 C3orf36Q3SXR2 165 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 C1orf94Q6P1W5 598 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 LRFN4Q6PJG9 635 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 ZNF813Q6ZN06 617 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 IGFN1Q86VF2 1251 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 PIAS4Q8N2W9 510 aaPredicted RBP13.13□□□□□ -0.31
UPF1-202ENST00000594243 FAM169BQ8N8A8 192 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 SYT14Q8NB59 555 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 NOXO1Q8NFA2 376 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 GNPDA2Q8TDQ7 276 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 AKAP1Q92667 903 aaKnown RBP eCLIP13.13□□□□□ -0.31
UPF1-202ENST00000594243 PIGTQ969N2 578 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 MCHR2Q969V1 340 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 RBP7Q96R05 134 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 CHID1Q9BWS9 393 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 NELFAQ9H3P2 528 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 CCM2LQ9NUG4 571 aaPredicted RBP13.13□□□□□ -0.31
UPF1-202ENST00000594243 GRHPRQ9UBQ7 328 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 POMPQ9Y244 141 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 PLEKHA6Q9Y2H5 1048 aa13.13□□□□□ -0.31
UPF1-202ENST00000594243 OTOGQ6ZRI0 2925 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 DHRS12A0PJE2 317 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 HS3ST1O14792 307 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 MGRN1O60291 552 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 ATE1O95260 518 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 CD14P08571 375 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 CBR1P16152 277 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 ARR3P36575 388 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 CAPZA2P47755 286 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 TOP3AQ13472 1001 aaPredicted RBP13.12□□□□□ -0.31
UPF1-202ENST00000594243 GK3PQ14409 553 aa13.12□□□□□ -0.31
UPF1-202ENST00000594243 ZNF672Q499Z4 452 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms