RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TUBA1CQ9BQE3 449 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 COPS4Q9BT78 406 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 JAM3Q9BX67 310 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 PRRG4Q9BZD6 226 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 RACGAP1Q9H0H5 632 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 FGF20Q9NP95 211 aaPredicted RBP13.6□□□□□ -0.23
SS18-215ENST00000580642 INPP5EQ9NRR6 644 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 FLVCR1Q9Y5Y0 555 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 NCKAP5O14513 1909 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 A0A1B0GTH9 108 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 SLC35F4A4IF30 521 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 SLC22A20A6NK97 555 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 FAM183AA6NL82 134 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 RGS10O43665 173 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 XPNPEP2O43895 674 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 RAMP1O60894 148 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 TRMUO75648 421 aaKnown RBP13.59□□□□□ -0.23
SS18-215ENST00000580642 ZNF432O94892 652 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 GLCEO94923 617 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 PGA4P0DJD7 388 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 PGA3P0DJD8 388 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 SPI1P17947 270 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 EEF1B2P24534 225 aaKnown RBP13.59□□□□□ -0.23
SS18-215ENST00000580642 DCKP27707 260 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 TDGF1P3P51864 188 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 MVKQ03426 396 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 EIF2S3LQ2VIR3 472 aaKnown RBP13.59□□□□□ -0.23
SS18-215ENST00000580642 RIPPLY2Q5TAB7 128 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 OR2A2Q6IF42 318 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 SVOPQ8N4V2 548 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 ZIC4Q8N9L1 334 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 CYB561A3Q8NBI2 242 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 NOXO1Q8NFA2 376 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 ROBO4Q8WZ75 1007 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 GGHQ92820 318 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 WNT2BQ93097 391 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 TXNDC15Q96J42 360 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 SIGLEC11Q96RL6 698 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 CDCA4Q9BXL8 241 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 MRPS26Q9BYN8 205 aaKnown RBP13.59□□□□□ -0.23
SS18-215ENST00000580642 VCX3AQ9NNX9 186 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 CLCF1Q9UBD9 225 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 EXOGQ9Y2C4 368 aaKnown RBP13.59□□□□□ -0.23
SS18-215ENST00000580642 SNX5Q9Y5X3 404 aa13.59□□□□□ -0.23
SS18-215ENST00000580642 CHD8Q9HCK8 2581 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 FIGNL2A6NMB9 653 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 PTGES3LE9PB15 166 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 SLC43A1O75387 559 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 SERPINI2O75830 405 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 CDK1P06493 297 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 YES1P07947 543 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 CLDN17P56750 224 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 CLRN1P58418 232 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 GLO1Q04760 184 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 APOFQ13790 326 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 MCEMP1Q8IX19 187 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 TMEM123Q8N131 208 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 STX19Q8N4C7 294 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 FNDC9Q8TBE3 224 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 RELTQ969Z4 430 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 OTULINQ96BN8 352 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 NMD3Q96D46 503 aaKnown RBP13.58□□□□□ -0.24
SS18-215ENST00000580642 RNFT2Q96EX2 444 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 TMEM80Q96HE8 168 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 GMPPAQ96IJ6 420 aaPredicted RBP13.58□□□□□ -0.24
SS18-215ENST00000580642 OR2M2Q96R28 347 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 TM9SF2Q99805 663 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 SYT4Q9H2B2 425 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 OR51V1Q9H2C8 321 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 RPRD1BQ9NQG5 326 aaKnown RBP13.58□□□□□ -0.24
SS18-215ENST00000580642 ASB6Q9NWX5 421 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 MED29Q9NX70 200 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 AASSQ9UDR5 926 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 ING1Q9UK53 422 aaPredicted RBP13.58□□□□□ -0.24
SS18-215ENST00000580642 DIMT1Q9UNQ2 313 aaKnown RBP13.58□□□□□ -0.24
SS18-215ENST00000580642 B9D1Q9UPM9 204 aa13.58□□□□□ -0.24
SS18-215ENST00000580642 IGLV1-36A0A0B4J1U3 117 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 IGHV3-15A0A0B4J1V0 119 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 CCDC182A6NF36 153 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 KHDRBS3O75525 346 aaKnown RBP13.57□□□□□ -0.24
SS18-215ENST00000580642 HRGP04196 525 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 CRHP06850 196 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 EDN3P14138 238 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 KLK2P20151 261 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 CAPZA2P47755 286 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 NUDT6P53370 316 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 RPS7P62081 194 aaKnown RBP13.57□□□□□ -0.24
SS18-215ENST00000580642 ACTC1P68032 377 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 ACTA1P68133 377 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 RBPJQ06330 500 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 ST3GAL4Q11206 333 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 MELKQ14680 651 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 KLHL12Q53G59 568 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 NSUN5P2Q63ZY6 315 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 AHSA2Q719I0 299 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 C20orf196Q8IYI0 205 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 OR6V1Q8N148 313 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 CISD2Q8N5K1 135 aaKnown RBP13.57□□□□□ -0.24
SS18-215ENST00000580642 PROKR2Q8NFJ6 384 aa13.57□□□□□ -0.24
SS18-215ENST00000580642 FCGR1BQ92637 280 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms