RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ZNF845Q96IR2 970 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-209ENST00000573474 KCNK17Q96T54 332 aa12.2□□□□□ -0.46
CCDC40-209ENST00000573474 ALG12Q9BV10 488 aa12.2□□□□□ -0.46
CCDC40-209ENST00000573474 CDCA4Q9BXL8 241 aa12.2□□□□□ -0.46
CCDC40-209ENST00000573474 SRA1Q9HD15 236 aaKnown RBP12.2□□□□□ -0.46
CCDC40-209ENST00000573474 ZNF71Q9NQZ8 489 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-209ENST00000573474 PLSCR2Q9NRY7 297 aa12.2□□□□□ -0.46
CCDC40-209ENST00000573474 MCTS1Q9ULC4 181 aaKnown RBP12.2□□□□□ -0.46
CCDC40-209ENST00000573474 DIMT1Q9UNQ2 313 aaKnown RBP12.2□□□□□ -0.46
CCDC40-209ENST00000573474 CAMK2AQ9UQM7 478 aa12.2□□□□□ -0.46
CCDC40-209ENST00000573474 FKBP7Q9Y680 259 aa12.2□□□□□ -0.46
CCDC40-209ENST00000573474 IGF2RP11717 2491 aa12.2□□□□□ -0.46
CCDC40-209ENST00000573474 ANKRD11Q6UB99 2663 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-209ENST00000573474 DMXL2Q8TDJ6 3036 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 SLC35F4A4IF30 521 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 AKAP8O43823 692 aaKnown RBP12.19□□□□□ -0.46
CCDC40-209ENST00000573474 IGHG1P01857 330 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 FAM87AP0C7U9 286 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 JUNBP17275 347 aaPredicted RBP12.19□□□□□ -0.46
CCDC40-209ENST00000573474 PCMT1P22061 227 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 CRABP1P29762 137 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 ALDH3B2P48448 385 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 CLDN17P56750 224 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 MVKQ03426 396 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 EMX1Q04741 257 aaPredicted RBP12.19□□□□□ -0.46
CCDC40-209ENST00000573474 RASGEF1BQ0VAM2 473 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 POU4F2Q12837 409 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 GGTLC2Q14390 218 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 IRF3Q14653 427 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 DNM1P34Q6PK57 102 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 B3GNT6Q6ZMB0 384 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 ZBTB46Q86UZ6 589 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 OR6V1Q8N148 313 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 PROKR2Q8NFJ6 384 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 SARAFQ96BY9 339 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 SLC25A44Q96H78 314 aaPredicted RBP12.19□□□□□ -0.46
CCDC40-209ENST00000573474 TSSK2Q96PF2 358 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 RBP7Q96R05 134 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 EMC6Q9BV81 110 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 MRPL13Q9BYD1 178 aaKnown RBP12.19□□□□□ -0.46
CCDC40-209ENST00000573474 PRDM14Q9GZV8 571 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 NUAK2Q9H093 628 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 SYT4Q9H2B2 425 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 TNFRSF10DQ9UBN6 386 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 B9D1Q9UPM9 204 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 EXOSC1Q9Y3B2 195 aaKnown RBP12.19□□□□□ -0.46
CCDC40-209ENST00000573474 COMMD3-BMI1R4GMX3 469 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 PTPRQQ9UMZ3 2332 aa12.19□□□□□ -0.46
CCDC40-209ENST00000573474 ZNF716A6NP11 495 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 CENPBD1B2RD01 187 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 SLC16A7O60669 478 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 PYCR1P32322 319 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 MAP2K4P45985 399 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 CENPAP49450 140 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 BLVRAP53004 296 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 CLRN1P58418 232 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 DBPQ10586 325 aaPredicted RBP12.18□□□□□ -0.46
CCDC40-209ENST00000573474 CAMK2DQ13557 499 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 C3AR1Q16581 482 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 NADK2Q4G0N4 442 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 THEM4Q5T1C6 240 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 LINC01590Q5TEZ4 76 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 XAF1Q6GPH4 301 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 B3GLCTQ6Y288 498 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 WDFY1Q8IWB7 410 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 ZIC4Q8N9L1 334 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 POMGNT2Q8NAT1 580 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 SYT14Q8NB59 555 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 OR4F15Q8NGB8 312 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 OR51L1Q8NGJ5 315 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 OR51G2Q8NGK0 314 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 FNDC8Q8TC99 324 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 ZNRF4Q8WWF5 429 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 ZMYND19Q96E35 227 aaPredicted RBP12.18□□□□□ -0.46
CCDC40-209ENST00000573474 CRELD1Q96HD1 420 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 PRRG4Q9BZD6 226 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 PRORYQ9H606 182 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 ACOT13Q9NPJ3 140 aa12.18□□□□□ -0.46
CCDC40-209ENST00000573474 CHCHD3Q9NX63 227 aaKnown RBP12.18□□□□□ -0.46
CCDC40-209ENST00000573474 CFAP47Q6ZTR5 3102 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 IGKV3D-15A0A087WSY6 115 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 IGLV1-36A0A0B4J1U3 117 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 OR14I1A6ND48 311 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 FAM171A2A8MVW0 826 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 J3QRE1 110 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 DCTN6O00399 190 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 GPR171O14626 319 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 KHDRBS3O75525 346 aaKnown RBP12.17□□□□□ -0.46
CCDC40-209ENST00000573474 WISP2O76076 250 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 APOL3O95236 402 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 IGHA1P01876 353 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 ADRA2AP08913 450 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 SBK2P0C263 348 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 PGA4P0DJD7 388 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 PGA3P0DJD8 388 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 NR2C1P13056 603 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 MYL12AP19105 171 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 TBCEQ15813 527 aaPredicted RBP12.17□□□□□ -0.46
CCDC40-209ENST00000573474 NEDD8Q15843 81 aa12.17□□□□□ -0.46
CCDC40-209ENST00000573474 KRTCAP3Q53RY4 240 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms