RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 BLOC1S5-TXNDC5H3BN57 136 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 NME4O00746 187 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 DCTN3O75935 186 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 LYPD3O95274 346 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 BCL10O95999 233 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 SERPINA1P01009 418 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 IGF2P01344 180 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 MT-ND1P03886 318 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 THY1P04216 161 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 INHBBP09529 407 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 HLA-DOBP13765 273 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 IFNGR1P15260 489 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 FUT1P19526 365 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 DRD4P21917 467 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 TTKP33981 857 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 ARR3P36575 388 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 GSK3BP49841 420 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 DAP3P51398 398 aaKnown RBP7.07□□□□□ -1.28
VPS53-214ENST00000572607 TUBA1BP68363 451 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 TUBA4AP68366 448 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 MXRA7P84157 204 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 SLC25A3Q00325 362 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 CHRNB3Q05901 458 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 SPOCK1Q08629 439 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 ZP4Q12836 540 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 TRAM2Q15035 370 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 TUBA1AQ71U36 451 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 SLC35D2Q76EJ3 337 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 LINGO2Q7L985 606 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 BIVMQ86UB2 503 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 KRTAP1-3Q8IUG1 177 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 MUC15Q8N387 334 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 OR6X1Q8NH79 312 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 TMEM255BQ8WV15 326 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 ZNF566Q969W8 418 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 TXNDC15Q96J42 360 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 HSH2DQ96JZ2 352 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 LRRC37BQ96QE4 947 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 SMR3AQ99954 134 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 PRSS27Q9BQR3 290 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 ZNF426Q9BUY5 554 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 TRAF4Q9BUZ4 470 aaPredicted RBP7.07□□□□□ -1.28
VPS53-214ENST00000572607 KATNB1Q9BVA0 655 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 FNDC11Q9BVV2 318 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 NDEL1Q9GZM8 345 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 MYLK2Q9H1R3 596 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 CBLN4Q9NTU7 201 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 NDE1Q9NXR1 346 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 STX18Q9P2W9 335 aaKnown RBP7.07□□□□□ -1.28
VPS53-214ENST00000572607 SAMD4AQ9UPU9 718 aaKnown RBP7.07□□□□□ -1.28
VPS53-214ENST00000572607 ARL2BPQ9Y2Y0 163 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 JMJD1CQ15652 2540 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 CUBNO60494 3623 aa7.07□□□□□ -1.28
VPS53-214ENST00000572607 IGHV1-18A0A0C4DH31 117 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 ATP6V1G2-DDX39BF2Z307 99 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 H7C1Q1 480 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 DYNC1I1O14576 645 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 SEC14L2O76054 403 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 OR7A10O76100 309 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 FARS2O95363 451 aaKnown RBP7.06□□□□□ -1.28
VPS53-214ENST00000572607 RAB36O95755 333 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 IGHG1P01857 330 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 ASAH2BP0C7U1 165 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 SAGP10523 405 aaPredicted RBP7.06□□□□□ -1.28
VPS53-214ENST00000572607 CD79AP11912 226 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 NR2C1P13056 603 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 IFI30P13284 250 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 CBR1P16152 277 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 APOBEC3AP31941 199 aaPredicted RBP7.06□□□□□ -1.28
VPS53-214ENST00000572607 GYS2P54840 703 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 UGT2B15P54855 530 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 CLRN1P58418 232 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 SNRPD2P62316 118 aaKnown RBP7.06□□□□□ -1.28
VPS53-214ENST00000572607 NPRL3Q12980 569 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 MELKQ14680 651 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 TAF11Q15544 211 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 CLEC12BQ2HXU8 276 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 GSG1Q2KHT4 349 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 PGGHGQ32M88 737 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 C3orf36Q3SXR2 165 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 C16orf89Q6UX73 402 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 ZNF813Q6ZN06 617 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 CBLL1Q75N03 491 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 RRM2BQ7LG56 351 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 SLC46A3Q7Z3Q1 461 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 DTX2Q86UW9 622 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 TSPYL5Q86VY4 417 aaPredicted RBP7.06□□□□□ -1.28
VPS53-214ENST00000572607 PRIMA1Q86XR5 153 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 NKAIN4Q8IVV8 208 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 CDK20Q8IZL9 346 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 OFCC1Q8IZS5 231 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 LRRC17Q8N6Y2 441 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 FAM169BQ8N8A8 192 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 OR4F15Q8NGB8 312 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 PFN4Q8NHR9 129 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 IGFBPL1Q8WX77 278 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 SLC25A44Q96H78 314 aaPredicted RBP7.06□□□□□ -1.28
VPS53-214ENST00000572607 FOXB1Q99853 325 aa7.06□□□□□ -1.28
VPS53-214ENST00000572607 KRCC1Q9NPI7 259 aaPredicted RBP7.06□□□□□ -1.28
VPS53-214ENST00000572607 MEPEQ9NQ76 525 aaPredicted RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms