RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 EGR3Q06889 387 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 NFATC3Q12968 1075 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 MYBPHQ13203 477 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 POU4F3Q15319 338 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 OR1C1Q15619 314 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ACKR1Q16570 336 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 CTF1Q16619 201 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 THEM4Q5T1C6 240 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 SAMD5Q5TGI4 173 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 PRAMEF20Q5VT98 475 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 EEF1A1P5Q5VTE0 462 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 RAET1LQ5VY80 246 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 FCRLBQ6BAA4 426 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 TUBA3EQ6PEY2 450 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 KCTD18Q6PI47 426 aaPredicted RBP7.16□□□□□ -1.26
VPS39-213ENST00000570062 ZNF322Q6U7Q0 402 aaPredicted RBP7.16□□□□□ -1.26
VPS39-213ENST00000570062 ZBTB46Q86UZ6 589 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 LSM14AQ8ND56 463 aaKnown RBP7.16□□□□□ -1.26
VPS39-213ENST00000570062 OR10H4Q8NGA5 316 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 OR14L1PQ8NHC6 308 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ZNF417Q8TAU3 575 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ZNF519Q8TB69 540 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 POC1BQ8TC44 478 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 SNX33Q8WV41 574 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 PHYHIPQ92561 330 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 Q96M85 177 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 KLHL15Q96M94 604 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 JSRP1Q96MG2 331 aaPredicted RBP7.16□□□□□ -1.26
VPS39-213ENST00000570062 GNRHR2Q96P88 292 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 OR5B2Q96R09 309 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ZNF587Q96SQ5 575 aaPredicted RBP7.16□□□□□ -1.26
VPS39-213ENST00000570062 ALG8Q9BVK2 526 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ADGRL4Q9HBW9 690 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 PROK2Q9HC23 129 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 KLHL9Q9P2J3 617 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 IL17BQ9UHF5 180 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 KCNG2Q9UJ96 466 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 FBXL2Q9UKC9 423 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 STUB1Q9UNE7 303 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 SPTBP11277 2137 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 ZFYVE26Q68DK2 2539 aa7.16□□□□□ -1.26
VPS39-213ENST00000570062 CCDC88CQ9P219 2028 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 CEP250Q9BV73 2442 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 ZC3H12DA2A288 527 aaKnown RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 OR2M5A3KFT3 312 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 PMS2P1A4D2B8 440 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 OR6C68A6NDL8 312 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 CCDC182A6NF36 153 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 OR6C65A6NJZ3 312 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 AQP7P3A6NL99 342 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 MS4A18H0YCH9 400 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 GPRIN2O60269 458 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 ZIC3O60481 467 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 KHDRBS3O75525 346 aaKnown RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 NEURL1O76050 574 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 ACTL6AO96019 429 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 IGHG1P01857 330 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 HRGP04196 525 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 HPNP05981 417 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 IMPDH2P12268 514 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 ZNF823P16415 610 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 FGF9P31371 208 aaPredicted RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 LIPAP38571 399 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 CDKN2AP42771 156 aaKnown RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 ETV1P50549 477 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 CLDN6P56747 220 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 GPR85P60893 370 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 RPS3AP61247 264 aaKnown RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 TOMM20Q15388 145 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 TSTQ16762 297 aaKnown RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 MS4A18Q3C1V0 323 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 TBC1D25Q3MII6 688 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 TMEM176BQ3YBM2 270 aaPredicted RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 TEX30Q5JUR7 227 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 B3GNTL1Q67FW5 361 aaPredicted RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 BICRALQ6AI39 1079 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 RPL22L1Q6P5R6 122 aaKnown RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 DEGS2Q6QHC5 323 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 SLC35D2Q76EJ3 337 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 RHOUQ7L0Q8 258 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 FAM220AQ7Z4H9 259 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 BCDIN3DQ7Z5W3 292 aaKnown RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 LHFPL3Q86UP9 236 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 IGFN1Q86VF2 1251 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 SLC22A16Q86VW1 577 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 CROCCP3Q8IVE0 287 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 PHC2Q8IXK0 858 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 SLC35F2Q8IXU6 374 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 CYB561A3Q8NBI2 242 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 OR2M7Q8NG81 312 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 OR4F15Q8NGB8 312 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 OR6K6Q8NGW6 343 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 OR6X1Q8NH79 312 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 S100ZQ8WXG8 99 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 KISS1RQ969F8 398 aaPredicted RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 CPNE4Q96A23 557 aaPredicted RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 SLC25A44Q96H78 314 aaPredicted RBP7.15□□□□□ -1.26
VPS39-213ENST00000570062 SFXN2Q96NB2 322 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 OPALINQ96PE5 141 aa7.15□□□□□ -1.26
VPS39-213ENST00000570062 TSPAN32Q96QS1 320 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms