RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ARL5BQ96KC2 179 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 VSX1Q9NZR4 365 aaPredicted RBP18.28■□□□□ 0.52
CLN3-230ENST00000568076 IKZF2Q9UKS7 526 aa18.28■□□□□ 0.52
CLN3-230ENST00000568076 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 IGHMP01871 453 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 NR4A2P43354 598 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 INPP1P49441 399 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 ETFDHQ16134 617 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 LYPD8Q6UX82 237 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 ESPNLQ6ZVH7 1005 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 OR8K3Q8NH51 312 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 OR5AK2Q8NH90 309 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 OTOSQ8NHW6 89 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 ST8SIA1Q92185 356 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 RFT1Q96AA3 541 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 UPRTQ96BW1 309 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 MNTQ99583 582 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 SLC26A1Q9H2B4 701 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 SLCO1C1Q9NYB5 712 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 MRPL39Q9NYK5 338 aaKnown RBP18.27■□□□□ 0.52
CLN3-230ENST00000568076 PAIP2BQ9ULR5 123 aaKnown RBP18.27■□□□□ 0.52
CLN3-230ENST00000568076 SPATA2Q9UM82 520 aa18.27■□□□□ 0.52
CLN3-230ENST00000568076 IGLV1-36A0A0B4J1U3 117 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 HMX3A6NHT5 357 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 A8MV72 311 aaPredicted RBP18.26■□□□□ 0.51
CLN3-230ENST00000568076 MEN1O00255 615 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 OR2T1O43869 369 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 CTLA4P16410 223 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 EGR3Q06889 387 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 PYHIN1Q6K0P9 492 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 MRPL14Q6P1L8 145 aaKnown RBP18.26■□□□□ 0.51
CLN3-230ENST00000568076 ASB18Q6ZVZ8 466 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 EGFL6Q8IUX8 553 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 KDM8Q8N371 416 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 LGALS14Q8TCE9 139 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 HAVCR2Q8TDQ0 301 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 SNX18Q96RF0 628 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 MRPL22Q9NWU5 206 aaKnown RBP18.26■□□□□ 0.51
CLN3-230ENST00000568076 ZNF221Q9UK13 617 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 VDAC3Q9Y277 283 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 CFAP54Q96N23 3096 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 FAM240BA0A1B0GVZ2 78 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 EEF1E1O43324 174 aaKnown RBP18.26■□□□□ 0.51
CLN3-230ENST00000568076 SLC16A7O60669 478 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 TRIM3O75382 744 aaPredicted RBP18.26■□□□□ 0.51
CLN3-230ENST00000568076 OR6A2O95222 327 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 AGFG1P52594 562 aaKnown RBP18.26■□□□□ 0.51
CLN3-230ENST00000568076 PEAR1Q5VY43 1037 aaPredicted RBP18.26■□□□□ 0.51
CLN3-230ENST00000568076 C5orf46Q6UWT4 87 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 PRR23CQ6ZRP0 262 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 OR5L2Q8NGL0 311 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 OR2G2Q8NGZ5 317 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 PCDHGA9Q9Y5G4 932 aaKnown RBP18.26■□□□□ 0.51
CLN3-230ENST00000568076 TMEM14AQ9Y6G1 99 aa18.26■□□□□ 0.51
CLN3-230ENST00000568076 TRBV5-5A0A0J9YX44 114 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 SLC22A23A1A5C7 686 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 OR4C45A6NMZ5 311 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 SHISA8B8ZZ34 492 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 MS4A18H0YCH9 400 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 ZNF593O00488 134 aaPredicted RBP18.25■□□□□ 0.51
CLN3-230ENST00000568076 YKT6O15498 198 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 ATP6V1G1O75348 118 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 SLC43A1O75387 559 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 FGF5P12034 268 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 NAGAP17050 411 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 PTGDSP41222 190 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 SUMO3P55854 103 aaPredicted RBP18.25■□□□□ 0.51
CLN3-230ENST00000568076 DLX5P56178 289 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 FOXF1Q12946 379 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 MRPL28Q13084 256 aaKnown RBP18.25■□□□□ 0.51
CLN3-230ENST00000568076 GPR176Q14439 515 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 MS4A18Q3C1V0 323 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 Q499Y3 187 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 HES5Q5TA89 166 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 DEFB123Q8N688 67 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 TTC9Q92623 222 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 ATOH1Q92858 354 aaPredicted RBP18.25■□□□□ 0.51
CLN3-230ENST00000568076 GFM1Q96RP9 751 aaKnown RBP18.25■□□□□ 0.51
CLN3-230ENST00000568076 MYOTQ9UBF9 498 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 WDFY3Q8IZQ1 3526 aa18.25■□□□□ 0.51
CLN3-230ENST00000568076 MUC3AQ02505 3323 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 ANKRD61A6NGH8 418 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 IFITM5A6NNB3 132 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 LAMTOR5O43504 91 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 OR2J2O76002 312 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 HLA-DQA2P01906 255 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 TRAPPC2P0DI81 140 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 TRAPPC2BP0DI82 140 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 ZNF28P17035 718 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 DDOSTP39656 456 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 APOBEC1P41238 236 aaKnown RBP18.24■□□□□ 0.51
CLN3-230ENST00000568076 CLDN20P56880 219 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 TATDN3Q17R31 274 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 TBRG1Q3YBR2 411 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 SLC35D2Q76EJ3 337 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 WDFY1Q8IWB7 410 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 PRSS35Q8N3Z0 413 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 OR6S1Q8NH40 331 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 NSMAFQ92636 917 aa18.24■□□□□ 0.51
CLN3-230ENST00000568076 NUFIP1Q9UHK0 495 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms