RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 OR10A4Q9H209 315 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 GLTPQ9NZD2 209 aa17.15■□□□□ 0.34
CLN3-225ENST00000566824 AKAP6Q13023 2319 aa17.14■□□□□ 0.34
CLN3-225ENST00000566824 LRBAP50851 2863 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 ROS1P08922 2347 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 A0A096LPE4 126 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 A0A1W2PPR1 153 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 A0A1W2PPZ6 126 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 FAM221AA4D161 298 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 NPIPB13A6NJU9 1138 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 NPIPB4C9JG80 1138 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 IMPA2O14732 288 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 NDUFB2O95178 105 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 ACADSP16219 412 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 PPP3CBP16298 524 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 PRKACGP22612 351 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 CRYGSP22914 178 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 RPL4P36578 427 aaKnown RBP17.14■□□□□ 0.33
CLN3-225ENST00000566824 ACVR1BP36896 505 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 DAP3P51398 398 aaKnown RBP17.14■□□□□ 0.33
CLN3-225ENST00000566824 ACTR3P61158 418 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 RPL27P61353 136 aaKnown RBP17.14■□□□□ 0.33
CLN3-225ENST00000566824 FMODQ06828 376 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 TSPAN31Q12999 210 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 HIST3H3Q16695 136 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 ANKDD1AQ495B1 522 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 HMBOX1Q6NT76 420 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 FAM122BQ7Z309 247 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 YTHDF3Q7Z739 585 aaKnown RBP17.14■□□□□ 0.33
CLN3-225ENST00000566824 OR52N5Q8NH56 324 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 ZNF566Q969W8 418 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 NMD3Q96D46 503 aaKnown RBP17.14■□□□□ 0.33
CLN3-225ENST00000566824 C14orf79Q96F83 325 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 SAMD8Q96LT4 415 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 Q96M85 177 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 HS3ST6Q96QI5 342 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 POLDIP3Q9BY77 421 aaKnown RBP17.14■□□□□ 0.33
CLN3-225ENST00000566824 ULBP2Q9BZM5 246 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 EGLN3Q9H6Z9 239 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 KRCC1Q9NPI7 259 aaPredicted RBP17.14■□□□□ 0.33
CLN3-225ENST00000566824 SLC17A5Q9NRA2 495 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 ARMC1Q9NVT9 282 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 NPAP1Q9NZP6 1156 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 DNAJB9Q9UBS3 223 aa17.14■□□□□ 0.33
CLN3-225ENST00000566824 IGKV1D-43A0A0B4J1Z2 117 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 H7C1C5 153 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 GNGT2O14610 69 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 CTAG2O75638 210 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 TP53P04637 393 aaPredicted RBP17.13■□□□□ 0.33
CLN3-225ENST00000566824 CD14P08571 375 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 PRPS1P60891 318 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 LCN6P62502 163 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 TUBA1BP68363 451 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 TUBA4AP68366 448 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 GABPB1Q06547 395 aaPredicted RBP17.13■□□□□ 0.33
CLN3-225ENST00000566824 DBPQ10586 325 aaPredicted RBP17.13■□□□□ 0.33
CLN3-225ENST00000566824 SMARCD3Q6STE5 483 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 TUBA1AQ71U36 451 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 NOXO1Q8NFA2 376 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 OR10G2Q8NGC3 310 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 OR8D4Q8NGM9 314 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 FANK1Q8TC84 345 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 GIPC3Q8TF64 312 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 PYDC1Q8WXC3 89 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 HSD17B8Q92506 261 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 RASD2Q96D21 266 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 KCNK17Q96T54 332 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 FEVQ99581 238 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 NIPSNAP1Q9BPW8 284 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 C1QTNF6Q9BXI9 259 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 PLA2G12AQ9BZM1 189 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 OR52D1Q9H346 318 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 DENND2DQ9H6A0 471 aaPredicted RBP17.13■□□□□ 0.33
CLN3-225ENST00000566824 SLC24A3Q9HC58 644 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 NRIP3Q9NQ35 241 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 AP4S1Q9Y587 144 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 IER3IP1Q9Y5U9 82 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 SLC25A15Q9Y619 301 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 NOTCH2Q04721 2471 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 SPG11Q96JI7 2443 aa17.13■□□□□ 0.33
CLN3-225ENST00000566824 ZNF503-AS2A6NEH8 195 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 ANKRD65E5RJM6 399 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 CASKO14936 926 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 SLC2A10O95528 541 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 PPP1R3DO95685 299 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 IGHG1P01857 330 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 HRGP04196 525 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 QDPRP09417 244 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 IFNGR2P38484 337 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 CLRN1P58418 232 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 RFX4Q33E94 735 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 TBRG1Q3YBR2 411 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 MESTQ5EB52 335 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 TIMM23BQ5SRD1 257 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 ZNF620Q6ZNG0 422 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 ABHD12BQ7Z5M8 362 aaPredicted RBP17.12■□□□□ 0.33
CLN3-225ENST00000566824 AMIGO2Q86SJ2 522 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 ARIH2OSQ8N7S6 290 aa17.12■□□□□ 0.33
CLN3-225ENST00000566824 C1orf162Q8NEQ5 155 aaPredicted RBP17.12■□□□□ 0.33
CLN3-225ENST00000566824 LRTOMTQ8WZ04 291 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms