RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 OR6N1Q8NGY5 312 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 MOSPD2Q8NHP6 518 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 TXNDC15Q96J42 360 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 OR2M2Q96R28 347 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 USB1Q9BQ65 265 aaKnown RBP15.18■□□□□ 0.02
CLN3-217ENST00000565354 LINC00470Q9BZP3 86 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 OR10A4Q9H209 315 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 BEX4Q9NWD9 120 aaPredicted RBP15.18■□□□□ 0.02
CLN3-217ENST00000565354 HIF3AQ9Y2N7 669 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 LYVE1Q9Y5Y7 322 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 U3KQV3 271 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 UNC119BA6NIH7 251 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 FKBP6O75344 327 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 UPK3AO75631 287 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 GOSR1O95249 250 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 CD53P19397 219 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 COX5AP20674 150 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 MPGP29372 298 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 OMPP47874 163 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 CTXN1P60606 82 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 PRPS1P60891 318 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 TOP3AQ13472 1001 aaPredicted RBP15.17■□□□□ 0.02
CLN3-217ENST00000565354 ZBED5Q49AG3 693 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 ZNF433Q8N7K0 673 aaPredicted RBP15.17■□□□□ 0.02
CLN3-217ENST00000565354 SPATA3Q8NHX4 192 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 GNPDA2Q8TDQ7 276 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 S100PBPQ96BU1 408 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 WFIKKN1Q96NZ8 548 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 TNFRSF13CQ96RJ3 184 aa15.17■□□□□ 0.02
CLN3-217ENST00000565354 STX18Q9P2W9 335 aaKnown RBP15.17■□□□□ 0.02
CLN3-217ENST00000565354 M0R3G1 203 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 CDC42EP2O14613 210 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 E2F6O75461 281 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 ZNF432O94892 652 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 CSNK1A1P48729 337 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 CLRN1P58418 232 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 ROR2Q01974 943 aaKnown RBP15.16■□□□□ 0.02
CLN3-217ENST00000565354 LGALS3BPQ08380 585 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 PPP1R8Q12972 351 aaKnown RBP15.16■□□□□ 0.02
CLN3-217ENST00000565354 OR7E24Q6IFN5 339 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 IGFN1Q86VF2 1251 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 WFDC8Q8IUA0 241 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 OR6X1Q8NH79 312 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 ZNF566Q969W8 418 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 MUCL1Q96DR8 90 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 RAB3IPQ96QF0 476 aaPredicted RBP15.16■□□□□ 0.02
CLN3-217ENST00000565354 FUZQ9BT04 418 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 ULBP2Q9BZM5 246 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 MXRA5Q9NR99 2828 aa15.16■□□□□ 0.02
CLN3-217ENST00000565354 ARHGEF9O43307 516 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 NDUFB2O95178 105 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 IGHG1P01857 330 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 ITGA5P08648 1049 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 TSPAN19P0C672 248 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 LIMS1P48059 325 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 HMGA2P52926 109 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 RPS4XP62701 263 aaKnown RBP15.15■□□□□ 0.02
CLN3-217ENST00000565354 GABPB1Q06547 395 aaPredicted RBP15.15■□□□□ 0.02
CLN3-217ENST00000565354 GK3PQ14409 553 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 ACKR1Q16570 336 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 KLHL24Q6TFL4 600 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 CXXC5Q7LFL8 322 aaKnown RBP15.15■□□□□ 0.02
CLN3-217ENST00000565354 ZER1Q7Z7L7 766 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 C20orf196Q8IYI0 205 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 TMEM123Q8N131 208 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 FANK1Q8TC84 345 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 HSD17B8Q92506 261 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 SLC25A44Q96H78 314 aaPredicted RBP15.15■□□□□ 0.02
CLN3-217ENST00000565354 COX4I2Q96KJ9 171 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 LRR1Q96L50 414 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 TXNIPQ9H3M7 391 aa15.15■□□□□ 0.02
CLN3-217ENST00000565354 PCSK6P29122 969 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 ARHGDIAP52565 204 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 FOXG1P55316 489 aaPredicted RBP15.14■□□□□ 0.01
CLN3-217ENST00000565354 CEACAM16Q2WEN9 425 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 PGBD2Q6P3X8 592 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 OR9Q2Q8NGE9 314 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 OR4C15Q8NGM1 316 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 ASB10Q8WXI3 467 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 NANOS1Q8WY41 292 aaKnown RBP15.14■□□□□ 0.01
CLN3-217ENST00000565354 CRLF2Q9HC73 371 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 GPR35Q9HC97 309 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 NGBQ9NPG2 151 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 VNN3Q9NY84 501 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 POFUT2Q9Y2G5 429 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 FREM1Q5H8C1 2179 aa15.14■□□□□ 0.01
CLN3-217ENST00000565354 OR5H1A6NKK0 313 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 PDLIM1O00151 329 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 DEAF1O75398 565 aaPredicted RBP15.13■□□□□ 0.01
CLN3-217ENST00000565354 TIPRLO75663 272 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 HRGP04196 525 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 NR2C1P13056 603 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 ACADSP16219 412 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 FPR3P25089 353 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 ACVR1BP36896 505 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 SH3BGRP55822 239 aaPredicted RBP15.13■□□□□ 0.01
CLN3-217ENST00000565354 RPL27P61353 136 aaKnown RBP15.13■□□□□ 0.01
CLN3-217ENST00000565354 TSPAN31Q12999 210 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 CCNIQ14094 377 aa15.13■□□□□ 0.01
CLN3-217ENST00000565354 PPA1Q15181 289 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms