RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 PRKCDQ05655 676 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 PHYHD1Q5SRE7 291 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 ZNF544Q6NX49 715 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 ZNF813Q6ZN06 617 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 MBOAT2Q6ZWT7 520 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 ZNF627Q7L945 461 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 PIWIL3Q7Z3Z3 882 aaKnown RBP11.69□□□□□ -0.54
CLK3-213ENST00000563842 NRMQ8IXM6 262 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 FBXL14Q8N1E6 418 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 IL17RDQ8NFM7 739 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 NEUROG1Q92886 237 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 GTPBP3Q969Y2 492 aaKnown RBP11.69□□□□□ -0.54
CLK3-213ENST00000563842 PERPQ96FX8 193 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 PYURFQ96I23 114 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 FOXB1Q99853 325 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 DHRS9Q9BPW9 319 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 KATNB1Q9BVA0 655 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 NELFAQ9H3P2 528 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 DENND2DQ9H6A0 471 aaPredicted RBP11.69□□□□□ -0.54
CLK3-213ENST00000563842 NMNAT1Q9HAN9 279 aaPredicted RBP11.69□□□□□ -0.54
CLK3-213ENST00000563842 KRCC1Q9NPI7 259 aaPredicted RBP11.69□□□□□ -0.54
CLK3-213ENST00000563842 ZNF701Q9NV72 531 aaPredicted RBP11.69□□□□□ -0.54
CLK3-213ENST00000563842 TMEM5Q9Y2B1 443 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 HIF3AQ9Y2N7 669 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 ATP23Q9Y6H3 246 aa11.69□□□□□ -0.54
CLK3-213ENST00000563842 ARFGEF3Q5TH69 2177 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 A0A087WUU8 490 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 A0A1W2PRQ8 180 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 EFCAB9A8MZ26 197 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 MGRN1O60291 552 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 PIP5K1CO60331 668 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 PRSS23O95084 383 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 IGKV3-15P01624 115 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 F13BP05160 661 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 BMP4P12644 408 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 CAPZA2P47755 286 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 ZNF84P51523 738 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 DGCR6Q14129 220 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 MELKQ14680 651 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 ALG10Q5BKT4 473 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 OAFQ86UD1 273 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 DTX2Q86UW9 622 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 FAM156AQ8NDB6 213 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 FNDC8Q8TC99 324 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 POP5Q969H6 163 aaKnown RBP11.68□□□□□ -0.54
CLK3-213ENST00000563842 ZNF837Q96EG3 531 aaPredicted RBP11.68□□□□□ -0.54
CLK3-213ENST00000563842 TMUB1Q9BVT8 246 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 TXNIPQ9H3M7 391 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 MUC13Q9H3R2 512 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 MAN2C1Q9NTJ4 1040 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 FBXL3Q9UKT7 428 aa11.68□□□□□ -0.54
CLK3-213ENST00000563842 FLNAP21333 2647 aaKnown RBP11.67□□□□□ -0.54
CLK3-213ENST00000563842 IGHV1-18A0A0C4DH31 117 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 VSTM5A8MXK1 200 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 E7EQL1 145 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 OVOL3O00110 214 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 ARPC2O15144 300 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 DHHO43323 396 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 UBL3O95164 117 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 FARS2O95363 451 aaKnown RBP11.67□□□□□ -0.54
CLK3-213ENST00000563842 IGLV1-44P01699 117 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 SOD3P08294 240 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 PGA4P0DJD7 388 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 PGA3P0DJD8 388 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 FOSL1P15407 271 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 ACADSP16219 412 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 APOBEC3AP31941 199 aaPredicted RBP11.67□□□□□ -0.54
CLK3-213ENST00000563842 TTKP33981 857 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 FABP6P51161 128 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 ATP5J2P56134 94 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 TUBA1BP68363 451 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 TUBA4AP68366 448 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 LAPTM4AQ15012 233 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 ETFDHQ16134 617 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 GSG1Q2KHT4 349 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 PGGHGQ32M88 737 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 MTX3Q5HYI7 312 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 FGD3Q5JSP0 725 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 Q5PR19 223 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 FAM205BPQ63HN1 556 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 TMPRSS11FQ6ZWK6 438 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 TUBA1AQ71U36 451 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 YTHDF3Q7Z739 585 aaKnown RBP11.67□□□□□ -0.54
CLK3-213ENST00000563842 DPPA2Q7Z7J5 298 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 RBM15BQ8NDT2 890 aaKnown RBP11.67□□□□□ -0.54
CLK3-213ENST00000563842 OR4F15Q8NGB8 312 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 BCAS4Q8TDM0 211 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 ASB10Q8WXI3 467 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 C7orf34Q96L11 122 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 TRAF4Q9BUZ4 470 aaPredicted RBP11.67□□□□□ -0.54
CLK3-213ENST00000563842 CBLN4Q9NTU7 201 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 NDUFAF4Q9P032 175 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 MOKQ9UQ07 419 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 ACANP16112 2415 aa11.67□□□□□ -0.54
CLK3-213ENST00000563842 TRMUO75648 421 aaKnown RBP11.66□□□□□ -0.54
CLK3-213ENST00000563842 STAMBPO95630 424 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 FABP3P05413 133 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 QDPRP09417 244 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 OR8G3PP0DMU2 310 aa11.66□□□□□ -0.54
CLK3-213ENST00000563842 CD79AP11912 226 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms