RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PMS2P3Q13401 168 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TFDP1Q14186 410 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 GNA13Q14344 377 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TSC22D1Q15714 1073 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 STK11Q15831 433 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 LRRC36Q1X8D7 754 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TEX44Q53QW1 395 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 CLVS2Q5SYC1 327 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 C6orf52Q5T4I8 152 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 NEK5Q6P3R8 708 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TMEM270Q6UE05 265 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 CXCL17Q6UXB2 119 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TOM1L2Q6ZVM7 507 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF767PQ75MW2 155 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 HORMAD1Q86X24 394 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 RALGPS2Q86X27 583 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 PLCZ1Q86YW0 608 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 CRLF3Q8IUI8 442 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 C12orf56Q8IXR9 622 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TCAIMQ8N3R3 496 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 ARL6IP6Q8N6S5 226 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 LEMD2Q8NC56 503 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TTLQ8NG68 377 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 MCOLN3Q8TDD5 553 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TCP10LQ8TDR4 215 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 DCAKDQ8WVC6 231 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 NCLNQ969V3 563 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 C18orf25Q96B23 403 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 NRBF2Q96F24 287 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 PDXPQ96GD0 296 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TMEM80Q96HE8 168 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF560Q96MR9 790 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 SLC29A1Q99808 456 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 APOOQ9BUR5 198 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 ZNF717Q9BY31 904 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TM9SF3Q9HD45 589 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 MMP26Q9NRE1 261 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 FARSBQ9NSD9 589 aaKnown RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 ACOXLQ9NUZ1 547 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 SMOXQ9NWM0 555 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 PAK1IP1Q9NWT1 392 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 B3GNT2Q9NY97 397 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 CNIH4Q9P003 139 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 AKAP7Q9P0M2 348 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 STOX2Q9P2F5 926 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-208ENST00000559119 MBD2Q9UBB5 411 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 ONECUT1Q9UBC0 465 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 IL19Q9UHD0 177 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TBK1Q9UHD2 729 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 ATP6V1HQ9UI12 483 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 PSME4Q14997 1843 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 ECM29Q5VYK3 1845 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 MYH10P35580 1976 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 TECPR2O15040 1411 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 NWD1Q149M9 1564 aa2.32□□□□□ -2.04
VPS13C-208ENST00000559119 LRP5O75197 1615 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 RREB1Q92766 1687 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 KIF26AQ9ULI4 1882 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 RGSL1A5PLK6 1076 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 LINC00862A6NCI5 91 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CENPXA8MT69 81 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 E7ESA3 106 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CCRL2O00421 344 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 TOR1AO14656 332 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 TRDMT1O14717 391 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SPOPO43791 374 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 MRPS14O60783 128 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 UGT2B11O75310 529 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 MED6O75586 246 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CCNKO75909 580 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 OR7A10O76100 309 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 OR5F1O95221 314 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SNAPINO95295 136 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CCNE2O96020 404 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 ASS1P00966 412 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 IGLV3-19P01714 112 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 IGHV4-34P06331 123 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CAPN1P07384 714 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 RETP07949 1114 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 STSP08842 583 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SNRPAP09012 282 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SLC2A3P11169 496 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 COX4I1P13073 169 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 TCN1P20061 433 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 BGNP21810 368 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 ME2P23368 584 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 MAPK3P27361 379 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 CCND2P30279 289 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 EVI2BP34910 448 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 RPS5P46782 204 aaKnown RBP2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SERPINB10P48595 397 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 AQP5P55064 265 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 AP1S2P56377 157 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 GABARAPL2P60520 117 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 COPZ1P61923 177 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 IFITM3Q01628 133 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 GNA12Q03113 381 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 ENPEPQ07075 957 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 SCRN3Q0VDG4 424 aa2.31□□□□□ -2.04
VPS13C-208ENST00000559119 MERTKQ12866 999 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms