RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 C9orf16Q9BUW7 83 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 RBM4Q9BWF3 364 aaKnown RBP11.31□□□□□ -0.6
SHMT2-227ENST00000557269 SLCO5A1Q9H2Y9 848 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 GRHPRQ9UBQ7 328 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 FOXD3Q9UJU5 478 aaPredicted RBP11.31□□□□□ -0.6
SHMT2-227ENST00000557269 FLNCQ14315 2725 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 FREM1Q5H8C1 2179 aa11.31□□□□□ -0.6
SHMT2-227ENST00000557269 DIDO1Q9BTC0 2240 aaKnown RBP11.31□□□□□ -0.6
SHMT2-227ENST00000557269 TENM4Q6N022 2769 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 ALPK2Q86TB3 2170 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 IGKV1D-43A0A0B4J1Z2 117 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 CASQ2O14958 399 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-227ENST00000557269 ARPC3O15145 178 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 ARHGEF9O43307 516 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 SLC2A10O95528 541 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 ATP6V1G2O95670 118 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 APEHP13798 732 aaKnown RBP11.3□□□□□ -0.6
SHMT2-227ENST00000557269 HIST1H1CP16403 213 aaKnown RBP11.3□□□□□ -0.6
SHMT2-227ENST00000557269 IGHV1-2P23083 117 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 SDHAP31040 664 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 CDKN2AP42771 156 aaKnown RBP11.3□□□□□ -0.6
SHMT2-227ENST00000557269 GIPRP48546 466 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 ALDH3A2P51648 485 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 RPS6KA3P51812 740 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 CRISP1P54107 249 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 CDK5Q00535 292 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 MYBPC1Q00872 1141 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 SLC34A1Q06495 639 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 FMODQ06828 376 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 FAM27E3Q08E93 113 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 FAPQ12884 760 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 RIPK1Q13546 671 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 TAF11Q15544 211 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 HIST3H3Q16695 136 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 OGFRL1Q5TC84 451 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-227ENST00000557269 C9orf135Q5VTT2 229 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 GPR139Q6DWJ6 353 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 LRFN4Q6PJG9 635 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 Q6ZT83 130 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 CXorf67Q86X51 503 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-227ENST00000557269 UBE2J2Q8N2K1 259 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 LNX2Q8N448 690 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 OR52L1Q8NGH7 329 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 OR4K13Q8NH42 304 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 TEX47Q8TBZ9 253 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 DNAJC9Q8WXX5 260 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF566Q969W8 418 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 ZNF570Q96NI8 536 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 ALKBH3Q96Q83 286 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-227ENST00000557269 MBOAT4Q96T53 435 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 KCNK17Q96T54 332 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 RBM24Q9BX46 236 aaKnown RBP11.3□□□□□ -0.6
SHMT2-227ENST00000557269 LINC00470Q9BZP3 86 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 KCNJ16Q9NPI9 418 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 NPDC1Q9NQX5 325 aaPredicted RBP11.3□□□□□ -0.6
SHMT2-227ENST00000557269 GALNT8Q9NY28 637 aa11.3□□□□□ -0.6
SHMT2-227ENST00000557269 MYO18BQ8IUG5 2567 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 C19orf84I3L1E1 186 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 DLGAP1O14490 977 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 AKAP8O43823 692 aaKnown RBP11.29□□□□□ -0.6
SHMT2-227ENST00000557269 IGHG1P01857 330 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 ITGA5P08648 1049 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 CSNK1A1P48729 337 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 ASCL1P50553 236 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 ROR2Q01974 943 aaKnown RBP11.29□□□□□ -0.6
SHMT2-227ENST00000557269 KRR1Q13601 381 aaKnown RBP11.29□□□□□ -0.6
SHMT2-227ENST00000557269 SNTB1Q13884 538 aaKnown RBP11.29□□□□□ -0.6
SHMT2-227ENST00000557269 PTGES3Q15185 160 aaKnown RBP11.29□□□□□ -0.6
SHMT2-227ENST00000557269 PGGHGQ32M88 737 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 ZIK1Q3SY52 487 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-227ENST00000557269 FBXL19-AS1Q494R0 122 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 GALNT4Q8N4A0 578 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 NOXO1Q8NFA2 376 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 OR2T33Q8NG76 320 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 OR52E2Q8NGJ4 325 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 OR6N1Q8NGY5 312 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 LRR1Q96L50 414 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 NMNAT3Q96T66 252 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 DDOQ99489 341 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 GABARAPL3Q9BY60 117 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 NDEL1Q9GZM8 345 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 RIBC2Q9H4K1 309 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 GPR35Q9HC97 309 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 ASB6Q9NWX5 421 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 GLTPQ9NZD2 209 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 UPB1Q9UBR1 384 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 MALT1Q9UDY8 824 aa11.29□□□□□ -0.6
SHMT2-227ENST00000557269 USP9XQ93008 2570 aaPredicted RBP11.29□□□□□ -0.6
SHMT2-227ENST00000557269 SLC22A23A1A5C7 686 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 PRSS37A4D1T9 235 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 A6NIZ1 184 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 E9PQ18 207 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 IDH3BO43837 385 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 LYZL6O75951 148 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 KRT33AO76009 404 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 CNOT4O95628 575 aaKnown RBP11.28□□□□□ -0.6
SHMT2-227ENST00000557269 SNAP29O95721 258 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 CLDN1O95832 211 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 QDPRP09417 244 aa11.28□□□□□ -0.6
SHMT2-227ENST00000557269 COX5AP20674 150 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms