RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 FOLR1P15328 257 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 CD34P28906 385 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 CCR8P51685 355 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 FAM78AQ5JUQ0 283 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 C1orf220Q5T0J3 134 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 TMEM225Q6GV28 225 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 ZNF493Q6ZR52 646 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 BHLHA15Q7RTS1 189 aaPredicted RBP1.76□□□□□ -2.13
SCFD1-216ENST00000555550 WDR86Q86TI4 376 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 TMEM123Q8N131 208 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 PYROXD1Q8WU10 500 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 RNF139Q8WU17 664 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 TTC25Q96NG3 672 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 SULT4A1Q9BR01 284 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 THUMPD2Q9BTF0 503 aaKnown RBP1.76□□□□□ -2.13
SCFD1-216ENST00000555550 LRRN3Q9H3W5 708 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 C12orf10Q9HB07 376 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 RAB18Q9NP72 206 aa1.76□□□□□ -2.13
SCFD1-216ENST00000555550 MSH6P52701 1360 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 CEMIPQ8WUJ3 1361 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 A0A1B0GVI7 797 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 XPO1O14980 1071 aaKnown RBP1.75□□□□□ -2.13
SCFD1-216ENST00000555550 MGRN1O60291 552 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 UPK3AO75631 287 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 CDRT1O95170 752 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 OR56A5P0C7T3 313 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 PAX7P23759 505 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 GPR6P46095 362 aaPredicted RBP1.75□□□□□ -2.13
SCFD1-216ENST00000555550 RGS4P49798 205 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 SCRN3Q0VDG4 424 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 KLRB1Q12918 225 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 ABHD13Q7L211 337 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 NUDCD3Q8IVD9 361 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 PIANPQ8IYJ0 282 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 STPG2Q8N412 459 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 MED8Q96G25 268 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 DOK1Q99704 481 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 COQ10BQ9H8M1 238 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 UGT1A7Q9HAW7 530 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 UGT1A10Q9HAW8 530 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 UGT1A8Q9HAW9 530 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 ADAP2Q9NPF8 381 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 RNF14Q9UBS8 474 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 CHRNA9Q9UGM1 479 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 KIAA1257Q9ULG3 409 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 AURKCQ9UQB9 309 aa1.75□□□□□ -2.13
SCFD1-216ENST00000555550 RPAP1Q9BWH6 1393 aaPredicted RBP1.74□□□□□ -2.13
SCFD1-216ENST00000555550 CENPJQ9HC77 1338 aaPredicted RBP1.74□□□□□ -2.13
SCFD1-216ENST00000555550 IGLV3-22A0A075B6J6 115 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 IGHV3-74A0A0B4J1X5 117 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 IGKV1D-13A0A0B4J2D9 117 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 ZNF850A8MQ14 1090 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 K7EM74 188 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 CCNKO75909 580 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 CAPN1P07384 714 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 IGKV1-13P0DP09 117 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 AK4P27144 223 aaPredicted RBP1.74□□□□□ -2.13
SCFD1-216ENST00000555550 CCR1P32246 355 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 CSNK1A1P48729 337 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 PIGHQ14442 188 aaPredicted RBP1.74□□□□□ -2.13
SCFD1-216ENST00000555550 POU2AF1Q16633 256 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 ZNF683Q8IZ20 524 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 FAM9BQ8IZU0 186 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 ISYNA1Q9NPH2 558 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 UFSP2Q9NUQ7 469 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.74□□□□□ -2.13
SCFD1-216ENST00000555550 PIPOXQ9P0Z9 390 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 POLDIP2Q9Y2S7 368 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 UBIAD1Q9Y5Z9 338 aa1.74□□□□□ -2.13
SCFD1-216ENST00000555550 GPATCH8Q9UKJ3 1502 aaKnown RBP1.74□□□□□ -2.13
SCFD1-216ENST00000555550 GPRASP1Q5JY77 1395 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 METTL21EPA6NDL7 271 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 PRRG1O14668 218 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 RAMP3O60896 148 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 IDH1O75874 414 aaKnown RBP1.73□□□□□ -2.13
SCFD1-216ENST00000555550 DRD5P21918 477 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 MDH1P40925 334 aaKnown RBP1.73□□□□□ -2.13
SCFD1-216ENST00000555550 NPBWR2P48146 333 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 PPT1P50897 306 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 ARG2P78540 354 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 CBX1P83916 185 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 LOXL1Q08397 574 aaPredicted RBP1.73□□□□□ -2.13
SCFD1-216ENST00000555550 ZNF816Q0VGE8 651 aaPredicted RBP1.73□□□□□ -2.13
SCFD1-216ENST00000555550 SLC39A6Q13433 755 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 KLHL38Q2WGJ6 581 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 RABL6Q3YEC7 729 aaPredicted RBP1.73□□□□□ -2.13
SCFD1-216ENST00000555550 SLC36A3Q495N2 470 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 HSP90AA5PQ58FG0 334 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 TTC23Q5W5X9 447 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 NTM-AS1Q6ZSK4 140 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 ANKFN1Q8N957 763 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 FAM133AQ8N9E0 248 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 NECAP1Q8NC96 275 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 OR5D13Q8NGL4 314 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 TPPP3Q9BW30 176 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 POLE3Q9NRF9 147 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 TMOD2Q9NZR1 351 aa1.73□□□□□ -2.13
SCFD1-216ENST00000555550 KIF16BQ96L93 1317 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 WDR62O43379 1518 aa1.72□□□□□ -2.13
SCFD1-216ENST00000555550 IGLV1-50A0A075B6I6 118 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms