RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 UBE2IP63279 158 aaKnown RBP13.65□□□□□ -0.22
USP28-214ENST00000545540 DCAF12L2Q5VW00 463 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 ZCCHC12Q6PEW1 402 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 BPHLQ86WA6 291 aaPredicted RBP13.65□□□□□ -0.22
USP28-214ENST00000545540 BOLLQ8N9W6 283 aaKnown RBP13.65□□□□□ -0.22
USP28-214ENST00000545540 SLC2A12Q8TD20 617 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 GPR119Q8TDV5 335 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 CYYR1Q96J86 154 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 CXorf58Q96LI9 332 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 TSPAN32Q96QS1 320 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 OR11A1Q9GZK7 315 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 SCP2D1Q9UJQ7 156 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 IGHV4-34P06331 123 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 ALKBH1Q13686 389 aaKnown RBP13.65□□□□□ -0.22
USP28-214ENST00000545540 ZNF74Q16587 644 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 OR7E24Q6IFN5 339 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 DND1Q8IYX4 353 aaKnown RBP13.65□□□□□ -0.22
USP28-214ENST00000545540 PRSS35Q8N3Z0 413 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 TEX19Q8NA77 164 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 STK35Q8TDR2 534 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 PIPOXQ9P0Z9 390 aa13.65□□□□□ -0.22
USP28-214ENST00000545540 CGGBP1Q9UFW8 167 aaPredicted RBP13.65□□□□□ -0.22
USP28-214ENST00000545540 IGHV5-51A0A0C4DH38 117 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 DCDC2BA2VCK2 349 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 SOX1O00570 391 aaPredicted RBP13.64□□□□□ -0.23
USP28-214ENST00000545540 CD53P19397 219 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 RBM34P42696 430 aaKnown RBP13.64□□□□□ -0.23
USP28-214ENST00000545540 ARHGDIBP52566 201 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 FZD2Q14332 565 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 OPCMLQ14982 345 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 ZNF782Q6ZMW2 699 aaPredicted RBP13.64□□□□□ -0.23
USP28-214ENST00000545540 C17orf107Q6ZR85 190 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 TMED4Q7Z7H5 227 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 SLC35F3Q8IY50 421 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 OR51S1Q8NGJ8 323 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 MED30Q96HR3 178 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 UBQLN2Q9UHD9 624 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 CD207Q9UJ71 328 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 TCRBV16S1A1N1A0A5B0 115 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 NPIPB9F8W1W9 429 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 GABARAPH6UMI1 98 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 CLDN4O14493 209 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 PRAMEF2O60811 474 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 ICOSLGO75144 302 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 ITGA10O75578 1167 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 CD14P08571 375 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 SPARCP09486 303 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 Q499Y3 187 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 VWA2Q5GFL6 755 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 C1orf189Q5VU69 101 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 GPR139Q6DWJ6 353 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 NPAS1Q99742 590 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 LMF2Q9BU23 707 aaKnown RBP13.64□□□□□ -0.23
USP28-214ENST00000545540 MMP25Q9NPA2 562 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 H0YIG0 161 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 TSPAN4O14817 238 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 PNPP00491 289 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 LRRC37A5PQ49AS3 106 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 UNQ9370/PRO34162Q6UXP9 181 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 GLRX5Q86SX6 157 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 OR2G2Q8NGZ5 317 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 NMNAT2Q9BZQ4 307 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 CLEC1BQ9P126 229 aa13.64□□□□□ -0.23
USP28-214ENST00000545540 IGHV3-20A0A0C4DH32 117 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 L7N2F9 121 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 M0QYG6 137 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 ITGA5P08648 1049 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 H2BFSP57053 126 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 ZNF141Q15928 474 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 DEFB133Q30KQ1 61 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 C11orf88Q6PI97 169 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 FGD2Q7Z6J4 655 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 GRAMD2AQ8IUY3 354 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 OR4C16Q8NGL9 310 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 GPBAR1Q8TDU6 330 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 SEMA6CQ9H3T2 930 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 ELOVL3Q9HB03 270 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 A0A1W2PPL8 197 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 EIF1AYO14602 144 aaKnown RBP13.63□□□□□ -0.23
USP28-214ENST00000545540 LMX1BO60663 402 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 CD3DP04234 171 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 UBL4AP11441 157 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 ZNF35P13682 527 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 GTF2F2P13984 249 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 RAB14P61106 215 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 CSRP2Q16527 193 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 BEX5Q5H9J7 111 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 FAM122BQ7Z309 247 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 G6PC3Q9BUM1 346 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 MTIF3Q9H2K0 278 aaKnown RBP13.63□□□□□ -0.23
USP28-214ENST00000545540 COPZ2Q9P299 210 aa13.63□□□□□ -0.23
USP28-214ENST00000545540 SCDO00767 359 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 GOSR2O14653 212 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 KCNAB3O43448 404 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 UTS2O95399 124 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 DYRK1AQ13627 763 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 AANATQ16613 207 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 WDR38Q5JTN6 314 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 ZNF627Q7L945 461 aa13.62□□□□□ -0.23
USP28-214ENST00000545540 CCDC74AQ96AQ1 378 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms