RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ZNF570Q96NI8 536 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 LINC00470Q9BZP3 86 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 SLC7A10Q9NS82 523 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 UPB1Q9UBR1 384 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 NKX1-2Q9UD57 310 aaPredicted RBP15.13■□□□□ 0.01
LIG1-204ENST00000542460 MALT1Q9UDY8 824 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 PRSS50Q9UI38 385 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 BAIAP2Q9UQB8 552 aa15.13■□□□□ 0.01
LIG1-204ENST00000542460 BHLHE40O14503 412 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 XKRYO14609 159 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 CASQ2O14958 399 aaPredicted RBP15.12■□□□□ 0.01
LIG1-204ENST00000542460 MITFO75030 526 aaPredicted RBP15.12■□□□□ 0.01
LIG1-204ENST00000542460 KRT33AO76009 404 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 PGA4P0DJD7 388 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 PGA3P0DJD8 388 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 GIPRP48546 466 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 CRISP1P54107 249 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 RUNX1T1Q06455 604 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 C20orf196Q8IYI0 205 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 GPR137CQ8N3F9 429 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 OR6N1Q8NGY5 312 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 LRRC46Q96FV0 321 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 SLC29A1Q99808 456 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 MRPL13Q9BYD1 178 aaKnown RBP15.12■□□□□ 0.01
LIG1-204ENST00000542460 ASB6Q9NWX5 421 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 FOXD3Q9UJU5 478 aaPredicted RBP15.12■□□□□ 0.01
LIG1-204ENST00000542460 ORC6Q9Y5N6 252 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 NCOA6Q14686 2063 aaPredicted RBP15.12■□□□□ 0.01
LIG1-204ENST00000542460 TEX13CA0A0J9YWL9 993 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 NKX2-6A6NCS4 301 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 UPK3AO75631 287 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 TRMUO75648 421 aaKnown RBP15.12■□□□□ 0.01
LIG1-204ENST00000542460 CSNK1A1P48729 337 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 CLRN1P58418 232 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 FAPQ12884 760 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 FBXL19-AS1Q494R0 122 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 ABHD12BQ7Z5M8 362 aaPredicted RBP15.12■□□□□ 0.01
LIG1-204ENST00000542460 GABRG1Q8N1C3 465 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 LNX2Q8N448 690 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 TMEM54Q969K7 222 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 KCNK17Q96T54 332 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 RBM24Q9BX46 236 aaKnown RBP15.12■□□□□ 0.01
LIG1-204ENST00000542460 B3GAT2Q9NPZ5 323 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 C8orf4Q9NR00 106 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 ELOVL5Q9NYP7 299 aa15.12■□□□□ 0.01
LIG1-204ENST00000542460 M0R3G1 203 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 ARHGEF9O43307 516 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 AHCYL1O43865 530 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 NR2C1P13056 603 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 CDH2P19022 906 aaPredicted RBP15.11■□□□□ 0.01
LIG1-204ENST00000542460 RAD23AP54725 363 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 MYBPC1Q00872 1141 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 LGALS3BPQ08380 585 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 KRR1Q13601 381 aaKnown RBP15.11■□□□□ 0.01
LIG1-204ENST00000542460 GINS1Q14691 196 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 P2RY6Q15077 328 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 HIST3H3Q16695 136 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 LRRC36Q1X8D7 754 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 MESTQ5EB52 335 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 LPCAT4Q643R3 524 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 SLC27A4Q6P1M0 643 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 ADCK1Q86TW2 530 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 SYT14Q8NB59 555 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 NOXO1Q8NFA2 376 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 FNDC8Q8TC99 324 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 HDAC2Q92769 488 aaKnown RBP15.11■□□□□ 0.01
LIG1-204ENST00000542460 RASD2Q96D21 266 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 ALG12Q9BV10 488 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 GLTPQ9NZD2 209 aa15.11■□□□□ 0.01
LIG1-204ENST00000542460 DOPEY2Q9Y3R5 2298 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 DIDO1Q9BTC0 2240 aaKnown RBP15.1■□□□□ 0.01
LIG1-204ENST00000542460 PTPN13Q12923 2485 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 ZNF587BE7ETH6 402 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 RPL36A-HNRNPH2H7BZ11 118 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 ATP6V1G2O95670 118 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 RNF224P0DH78 156 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 PEX2P28328 305 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 PCYT1AP49585 367 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 CDK5Q00535 292 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 NPRL3Q12980 569 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 PTGES3Q15185 160 aaKnown RBP15.1■□□□□ 0.01
LIG1-204ENST00000542460 SLC35F1Q5T1Q4 408 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 OGFRL1Q5TC84 451 aaPredicted RBP15.1■□□□□ 0.01
LIG1-204ENST00000542460 PACRGLQ8N7B6 248 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 OR4Q3Q8NH05 313 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 ALKBH3Q96Q83 286 aaPredicted RBP15.1■□□□□ 0.01
LIG1-204ENST00000542460 RBP7Q96R05 134 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 TEX12Q9BXU0 123 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 GABARAPL3Q9BY60 117 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 GALNT8Q9NY28 637 aa15.1■□□□□ 0.01
LIG1-204ENST00000542460 INTS1Q8N201 2190 aaKnown RBP15.1■□□□□ 0.01
LIG1-204ENST00000542460 PCNX1Q96RV3 2341 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 PRSS37A4D1T9 235 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 HIST1H1CP16403 213 aaKnown RBP15.09■□□□□ 0.01
LIG1-204ENST00000542460 GRK5P34947 590 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 CD79BP40259 229 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 ROR2Q01974 943 aaKnown RBP15.09■□□□□ 0.01
LIG1-204ENST00000542460 TFF3Q07654 80 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 CD47Q08722 323 aa15.09■□□□□ 0.01
LIG1-204ENST00000542460 ITGADQ13349 1161 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms