RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 GALNT8Q9NY28 637 aa11.47□□□□□ -0.57
CCDC42-202ENST00000539522 COQ3Q9NZJ6 369 aa11.47□□□□□ -0.57
CCDC42-202ENST00000539522 FOXD3Q9UJU5 478 aaPredicted RBP11.47□□□□□ -0.57
CCDC42-202ENST00000539522 NOSIPQ9Y314 301 aaKnown RBP11.47□□□□□ -0.57
CCDC42-202ENST00000539522 EMC9Q9Y3B6 208 aa11.47□□□□□ -0.57
CCDC42-202ENST00000539522 ADAM18Q9Y3Q7 739 aa11.47□□□□□ -0.57
CCDC42-202ENST00000539522 FBN2P35556 2912 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 SPTBN1Q01082 2364 aaKnown RBP11.46□□□□□ -0.57
CCDC42-202ENST00000539522 A1L4Q6 167 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 SLC35F4A4IF30 521 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 ZAR1LA6NP61 321 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 EEF1E1-BLOC1S5C9J1V9 151 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 H3BN98 237 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 DVL2O14641 736 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 MSTNO14793 375 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 EEF1E1O43324 174 aaKnown RBP11.46□□□□□ -0.57
CCDC42-202ENST00000539522 SERPINI2O75830 405 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 SMNDC1O75940 238 aaKnown RBP eCLIP11.46□□□□□ -0.57
CCDC42-202ENST00000539522 CLIC3O95833 236 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 IGHMP01871 453 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 ZNF43P17038 809 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 AHCYP23526 432 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 POU1F1P28069 291 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 EPHA2P29317 976 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 GGT2P36268 569 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 GIPRP48546 466 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 ISL1P61371 349 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 FAM27E3Q08E93 113 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 TSC22D1Q15714 1073 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 ACKR1Q16570 336 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 SLC25A35Q3KQZ1 300 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 RPL13AP3Q6NVV1 102 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 ZNF620Q6ZNG0 422 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 SLC35D2Q76EJ3 337 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 UEVLDQ8IX04 471 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 MCEMP1Q8IX19 187 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 CLDN22Q8N7P3 220 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 ZNF519Q8TB69 540 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 CA5BP1Q8WTZ4 195 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 ASB10Q8WXI3 467 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 GPX7Q96SL4 187 aaPredicted RBP11.46□□□□□ -0.57
CCDC42-202ENST00000539522 TEX12Q9BXU0 123 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 MRPL13Q9BYD1 178 aaKnown RBP11.46□□□□□ -0.57
CCDC42-202ENST00000539522 PIGMQ9H3S5 423 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 IL20Q9NYY1 176 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 PROCRQ9UNN8 238 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 NOX1Q9Y5S8 564 aa11.46□□□□□ -0.57
CCDC42-202ENST00000539522 DOPEY2Q9Y3R5 2298 aa11.46□□□□□ -0.58
CCDC42-202ENST00000539522 CELSR2Q9HCU4 2923 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 IGKV1D-43A0A0B4J1Z2 117 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 GPR171O14626 319 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 RNF13O43567 381 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 MPZL2O60487 215 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 HIST1H2ABP04908 130 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 ITGA5P08648 1049 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 COX5AP20674 150 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 IGHV1-2P23083 117 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 COL8A1P27658 744 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 ASCL1P50553 236 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 BIDP55957 195 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 CDC42P60953 191 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 ERVK-25P63136 954 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 CSNK2BP67870 215 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 CDK5Q00535 292 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 TOP3AQ13472 1001 aaPredicted RBP11.45□□□□□ -0.58
CCDC42-202ENST00000539522 HIST3H3Q16695 136 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 ANKDD1AQ495B1 522 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 ALG10Q5BKT4 473 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 ZNF362Q5T0B9 420 aaPredicted RBP11.45□□□□□ -0.58
CCDC42-202ENST00000539522 HIST2H2BCQ6DN03 193 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 NIPAL3Q6P499 406 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 CASP12Q6UXS9 341 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 STAC2Q6ZMT1 411 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 HIST3H2AQ7L7L0 130 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 AAED1Q7RTV5 226 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 C20orf196Q8IYI0 205 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 ANKK1Q8NFD2 765 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 TRUB1Q8WWH5 349 aaKnown RBP11.45□□□□□ -0.58
CCDC42-202ENST00000539522 HDAC2Q92769 488 aaKnown RBP11.45□□□□□ -0.58
CCDC42-202ENST00000539522 HIST1H2ACQ93077 130 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 SAMD8Q96LT4 415 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 KATNB1Q9BVA0 655 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 OR52D1Q9H346 318 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 NRIP3Q9NQ35 241 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 INIPQ9NRY2 104 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 EMC3Q9P0I2 261 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 MALT1Q9UDY8 824 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 ZNF346Q9UL40 294 aaKnown RBP11.45□□□□□ -0.58
CCDC42-202ENST00000539522 RCE1Q9Y256 329 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 ICE1Q9Y2F5 2266 aa11.45□□□□□ -0.58
CCDC42-202ENST00000539522 SPTAN1Q13813 2472 aaKnown RBP11.45□□□□□ -0.58
CCDC42-202ENST00000539522 NPIPB13A6NJU9 1138 aa11.44□□□□□ -0.58
CCDC42-202ENST00000539522 NPIPB4C9JG80 1138 aa11.44□□□□□ -0.58
CCDC42-202ENST00000539522 MRPL33O75394 65 aaKnown RBP11.44□□□□□ -0.58
CCDC42-202ENST00000539522 TNFAIP8O95379 198 aa11.44□□□□□ -0.58
CCDC42-202ENST00000539522 HMGN1P05114 100 aa11.44□□□□□ -0.58
CCDC42-202ENST00000539522 LYNP07948 512 aa11.44□□□□□ -0.58
CCDC42-202ENST00000539522 PGA4P0DJD7 388 aa11.44□□□□□ -0.58
CCDC42-202ENST00000539522 PGA3P0DJD8 388 aa11.44□□□□□ -0.58
CCDC42-202ENST00000539522 CTXN1P60606 82 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms