RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 SMN1Q16637 294 aaKnown RBP9.85□□□□□ -0.83
CLIP1-209ENST00000537178 NKAIN3Q8N8D7 197 aa9.85□□□□□ -0.83
CLIP1-209ENST00000537178 C3orf30Q96M34 536 aa9.85□□□□□ -0.83
CLIP1-209ENST00000537178 CPPED1Q9BRF8 314 aaPredicted RBP9.85□□□□□ -0.83
CLIP1-209ENST00000537178 TPPP3Q9BW30 176 aa9.85□□□□□ -0.83
CLIP1-209ENST00000537178 ARSAP15289 507 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 NAGAP17050 411 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 TGM4P49221 684 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 SNTB1Q13884 538 aaKnown RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 RAB35Q15286 201 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 LEXMQ3ZCV2 418 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 GGTA1PQ4G0N0 100 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 VHLLQ6RSH7 139 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 MBOAT2Q6ZWT7 520 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 PRICKLE2Q7Z3G6 844 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 OR6M1Q8NGM8 313 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 YIPF5Q969M3 257 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 HHIPQ96QV1 700 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 NXT1Q9UKK6 140 aaKnown RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 COL2A1P02458 1487 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 IGKV6D-21A0A0A0MT36 114 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 NKX6-3A6NJ46 265 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF814B7Z6K7 855 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 SYT5O00445 386 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ANGPTL7O43827 346 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 TUSC2O75896 110 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 SLC5A2P31639 672 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 S100A11P31949 105 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 TNFRSF17Q02223 184 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 C17orf67Q0P5P2 114 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 DBPQ10586 325 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ILKQ13418 452 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ADIRFQ15847 76 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ADIPOR2Q86V24 386 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 SLC35G3Q8N808 338 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 PNPLA1Q8N8W4 532 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 PXT1Q8NFP0 134 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 OR1S2Q8NGQ3 325 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ABHD4Q8TB40 342 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 SLC46A1Q96NT5 459 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 FAM234AQ9H0X4 552 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 CRYM-AS1A6NIL9 109 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 H0YIV9 168 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 I6L893 689 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 SLC16A6O15403 523 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 FABP7O15540 132 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 PHF1O43189 567 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 PMS2P2O95744 297 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 TCRBP04435 133 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 SCG5P05408 212 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 HPNP05981 417 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 EIF1P41567 113 aaKnown RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 YPEL5P62699 121 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ZP2Q05996 745 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 HTR4Q13639 388 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 RPE65Q16518 533 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ADGRF3Q8IZF5 1079 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 CORO2AQ92828 525 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 TNFRSF13CQ96RJ3 184 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF416Q9BWM5 594 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 PLEKHF2Q9H8W4 249 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 TRBV4-1A0A0J9YWV2 114 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ADH4P08319 380 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 NAT1P18440 290 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 SSR4P51571 173 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 RAC1P63000 192 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 SSX9Q7RTT3 188 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 EID2Q8N6I1 236 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 OR2T11Q8NH01 316 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 RPL3LQ92901 407 aaKnown RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF582Q96NG8 517 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 BARHL1Q9BZE3 327 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF331Q9NQX6 463 aaPredicted RBP9.84□□□□□ -0.83
CLIP1-209ENST00000537178 TAAR2Q9P1P5 351 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 PSORS1C1Q9UIG5 152 aa9.84□□□□□ -0.83
CLIP1-209ENST00000537178 PPP6CO00743 305 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 CA3P07451 260 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 CHRM2P08172 466 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 ZNF865P0CJ78 1059 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-209ENST00000537178 ZNF93P35789 620 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-209ENST00000537178 ZNF133P52736 654 aaPredicted RBP9.83□□□□□ -0.84
CLIP1-209ENST00000537178 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.83□□□□□ -0.84
CLIP1-209ENST00000537178 OR5D18Q8NGL1 313 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 TMEM40Q8WWA1 233 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 SEH1LQ96EE3 360 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 ERVMER34-1Q9H9K5 563 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 RAB22AQ9UL26 194 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 DIMT1Q9UNQ2 313 aaKnown RBP9.83□□□□□ -0.84
CLIP1-209ENST00000537178 SEC14L6B5MCN3 397 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 TMEM189-UBE2V1I3L0A0 370 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 SIGLEC6O43699 453 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 SCRG1O75711 98 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 NCR1O76036 304 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 GASTP01350 101 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 TMEM11P17152 192 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 TAGLN2P37802 199 aaKnown RBP9.83□□□□□ -0.84
CLIP1-209ENST00000537178 WNT7BP56706 349 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 CDKN3Q16667 212 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 ZNF836Q6ZNA1 936 aa9.83□□□□□ -0.84
CLIP1-209ENST00000537178 SLC39A11Q8N1S5 342 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms