RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 SGK3Q96BR1 496 aa2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 CNDP1Q96KN2 507 aa2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 SH3GL3Q99963 347 aa2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 CCDC77Q9BR77 488 aa2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 HDHD3Q9BSH5 251 aaPredicted RBP2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 TM9SF3Q9HD45 589 aa2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 NMRK1Q9NWW6 199 aa2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 STOX2Q9P2F5 926 aaPredicted RBP2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 GNPTGQ9UJJ9 305 aa2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 PRG3Q9Y2Y8 225 aaPredicted RBP2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 STARD10Q9Y365 291 aa2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 LRRK1Q38SD2 2015 aa2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 RAI1Q7Z5J4 1906 aaPredicted RBP2.66□□□□□ -1.98
HMGB1P28-201ENST00000507778 ZNF646O15015 1829 aaPredicted RBP2.65□□□□□ -1.98
HMGB1P28-201ENST00000507778 A0A1B0GVI7 797 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 PRSS37A4D1T9 235 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 PPP1R2P9O14990 202 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 WBP4O75554 376 aaKnown RBP2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 EIF3GO75821 320 aaKnown RBP eCLIP2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 IGHV3-43DP0DP04 118 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 TOP1P11387 765 aaKnown RBP2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 GDI1P31150 447 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 CCR8P51685 355 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 FGF8P55075 233 aaPredicted RBP2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 GPX6P59796 221 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 SMARCB1Q12824 385 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 CAPRIN1Q14444 709 aaKnown RBP2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 GUCA2BQ16661 112 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 VPS26BQ4G0F5 336 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 PIGGQ5H8A4 983 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 B3GNT7Q8NFL0 401 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 RHEBL1Q8TAI7 183 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 ASB9Q96DX5 294 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 AURKBQ96GD4 344 aaPredicted RBP2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 CENPKQ9BS16 269 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 OSBPL10Q9BXB5 764 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 SLC25A39Q9BZJ4 359 aaPredicted RBP2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 ILKAPQ9H0C8 392 aaPredicted RBP2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 DMAP1Q9NPF5 467 aaPredicted RBP2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 CTPS2Q9NRF8 586 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 INPP5EQ9NRR6 644 aa2.65□□□□□ -1.99
HMGB1P28-201ENST00000507778 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 IGHV3-64DA0A0J9YX35 117 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 SUPT3HO75486 399 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 FGGP02679 453 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 SMIM10L1P0DMW3 83 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 ADRB3P13945 408 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF43P17038 809 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 CNR1P21554 472 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 RORCP51449 518 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 CCR6P51684 374 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 CRISP3P54108 245 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 RPS21P63220 83 aaKnown RBP2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 MECOMQ03112 1051 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF92Q03936 586 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 TMEM183BQ1AE95 376 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 XKR7Q5GH72 579 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 TMEM255AQ5JRV8 349 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 ARMC12Q5T9G4 340 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 ASCL5Q7RTU5 278 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 TMEM183AQ8IXX5 376 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 MS4A15Q8N5U1 240 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 IL22RA2Q969J5 263 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 TMEM54Q969K7 222 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 SMIM10Q96HG1 83 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF414Q96IQ9 312 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 LINC00167Q96N53 147 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 NUP58Q9BVL2 599 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 GABARAPL3Q9BY60 117 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 GPR61Q9BZJ8 451 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 DNTTIP1Q9H147 329 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 UGT1A7Q9HAW7 530 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 UGT1A10Q9HAW8 530 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 UGT1A8Q9HAW9 530 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 CTNNA3Q9UI47 895 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 WSB1Q9Y6I7 421 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 MAP3K15Q6ZN16 1313 aa2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 COL16A1Q07092 1604 aaPredicted RBP2.64□□□□□ -1.99
HMGB1P28-201ENST00000507778 A0A0B4J2A0 478 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF726A6NNF4 738 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF24P17028 368 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 AK4P27144 223 aaPredicted RBP2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 HOXA9P31269 272 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 SERPINB5P36952 375 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 ACLYP53396 1101 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 KRTAP12-2P59991 146 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 YWHAGP61981 247 aaKnown RBP eCLIP2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 ECH1Q13011 328 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 ZNF836Q6ZNA1 936 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 NIPA1Q7RTP0 329 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 LIX1Q8N485 282 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 EID2Q8N6I1 236 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 Q8N9L7 120 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 HSD17B11Q8NBQ5 300 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 DUSP18Q8NEJ0 188 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 OR1S2Q8NGQ3 325 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 RAB3IL1Q8TBN0 382 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 ACTRT1Q8TDG2 376 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 CXorf40AQ8TE69 158 aa2.63□□□□□ -1.99
HMGB1P28-201ENST00000507778 GIMAP1Q8WWP7 306 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms