RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 IQCMA0A1B0GVH7 501 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 MS4A18H0YCH9 400 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 SERPINI2O75830 405 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 DRD4P21917 467 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 RAD52P43351 418 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 ALDH3B1P43353 468 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 OR1Q1Q15612 314 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 TBC1D28Q2M2D7 210 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 MS4A18Q3C1V0 323 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 ACSM5Q6NUN0 579 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 FAHD2BQ6P2I3 314 aaPredicted RBP18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 USP43Q70EL4 1123 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF566Q969W8 418 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF837Q96EG3 531 aaPredicted RBP18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 FAHD2AQ96GK7 314 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 MS4A3Q96HJ5 214 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 SUCNR1Q9BXA5 334 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 PAIP1Q9H074 479 aaKnown RBP18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 TMEM38AQ9H6F2 299 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 DECR2Q9NUI1 292 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 MED29Q9NX70 200 aa18.08■□□□□ 0.48
SQSTM1-210ENST00000506042 A0A0G2JMP0 313 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 A0A0X1KG70 313 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 LYNX1G3V0Z9 82 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 LYNX1P0DP58 116 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 GAAP10253 952 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 TCN1P20061 433 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF84P51523 738 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 RBBP4Q09028 425 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 SCARB2Q14108 478 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 MPP2Q14168 576 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 TNFAIP8L3Q5GJ75 292 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 ELFN2Q5R3F8 820 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF613Q6PF04 617 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 SLC2A7Q6PXP3 512 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 HIPK4Q8NE63 616 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 OR4M2Q8NGB6 313 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 SYNPRQ8TBG9 265 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 BCL2L14Q9BZR8 327 aa18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF275Q9NSD4 429 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 STX18Q9P2W9 335 aaKnown RBP18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.07■□□□□ 0.48
SQSTM1-210ENST00000506042 A0A0B4J2E0 115 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 A0A1B0GX12 115 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF503-AS2A6NEH8 195 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 SPRY1O43609 319 aaPredicted RBP18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 FMO6PO60774 539 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 TGDSO95455 350 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 BGLAPP02818 100 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 NUDT7P0C024 238 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 NR2C1P13056 603 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 GATA3P23771 443 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 CFPP27918 469 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 HTR2AP28223 471 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 BIDP55957 195 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 RAB39AQ14964 217 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 FXNQ16595 210 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 TTC33Q6PID6 262 aaPredicted RBP18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 SLC30A8Q8IWU4 369 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 SLC22A24Q8N4F4 322 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 SLC30A7Q8NEW0 376 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 OR9I1Q8NGQ6 314 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 OR6X1Q8NH79 312 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 PARD6BQ9BYG5 372 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 LPAR2Q9HBW0 351 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 HINT3Q9NQE9 182 aaKnown RBP18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 GLTPQ9NZD2 209 aa18.06■□□□□ 0.48
SQSTM1-210ENST00000506042 IGKV1D-42A0A075B6H8 117 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 J3QLI3 93 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 PLPP3O14495 311 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 RNF13O43567 381 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 CHP2O43745 196 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 BCL10O95999 233 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 HPXP02790 462 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 LCKP06239 509 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 NRN1LQ496H8 165 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 LRIF1Q5T3J3 769 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 PEG10Q86TG7 708 aaKnown RBP18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 C1orf174Q8IYL3 243 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 ZNF519Q8TB69 540 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 FAM216AQ8WUB2 273 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 RAB1CQ92928 201 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 SPDL1Q96EA4 605 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 SLC25A44Q96H78 314 aaPredicted RBP18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 RABEP2Q9H5N1 569 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 TCF7L2Q9NQB0 619 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 NANSQ9NR45 359 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 NKIRAS2Q9NYR9 191 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 TREM2Q9NZC2 230 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 TAAR3PQ9P1P4 343 aa18.05■□□□□ 0.48
SQSTM1-210ENST00000506042 C17orf100A8MU93 164 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 CLDN25C9JDP6 229 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 C11orf98E9PRG8 122 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 HPRP00739 348 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 NAT2P11245 290 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 HLA-DOBP13765 273 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 EPHA1P21709 976 aa18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 MRPL19P49406 292 aaKnown RBP18.04■□□□□ 0.48
SQSTM1-210ENST00000506042 AQP5P55064 265 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms