RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CCNL2Q96S94 520 aaPredicted RBP14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR10A4Q9H209 315 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MMP25Q9NPA2 562 aa14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 NPDC1Q9NQX5 325 aaPredicted RBP14.61□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CEP192Q8TEP8 1941 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 A0A1B0GTH9 108 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ANKRD20A5PA0PJZ0 165 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 BLACEA4D250 179 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 NAP1L6A6NFF2 107 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CLDN4O14493 209 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SRPX2O60687 465 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 NSA2O95478 260 aaKnown RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TXNDC12O95881 172 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ASAH2BP0C7U1 165 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CALCBP10092 127 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MAOBP27338 520 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SSTR2P30874 369 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SDHAP31040 664 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ADH7P40394 386 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 P2RX1P51575 399 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SKP2Q13309 424 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 Q499Y3 187 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OLFML2AQ68BL7 652 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 APOOLQ6UXV4 268 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MED25Q71SY5 747 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CDC20BQ86Y33 519 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 METTL27Q8N6F8 245 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FCAMRQ8WWV6 532 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CLDN23Q96B33 292 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 NXPE2Q96DL1 559 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MSANTD3Q96H12 275 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LCORQ96JN0 433 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ADAD1Q96M93 576 aaKnown RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF578Q96N58 590 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 DPCDQ9BVM2 203 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 COL25A1Q9BXS0 654 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SPRTNQ9H040 489 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 GPR27Q9NS67 375 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 AKAP7Q9P0M2 348 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MOKQ9UQ07 419 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TOR1AO14656 332 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PRAF2O60831 178 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 IFNA16P05015 189 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 F13BP05160 661 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TACSTD2P09758 323 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PNMTP11086 282 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CDK2P24941 298 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ALG10Q5BKT4 473 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 DND1Q8IYX4 353 aaKnown RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR8H3Q8N146 312 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 EID2Q8N6I1 236 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 C10orf53Q8N6V4 93 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR2T4Q8NH00 348 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR5AK2Q8NH90 309 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 HAVCR1Q96D42 359 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 S100A16Q96FQ6 103 aaKnown RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LPAR4Q99677 370 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MAP3K3Q99759 626 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 METTL17Q9H7H0 456 aaPredicted RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SRA1Q9HD15 236 aaKnown RBP14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SLC6A5Q9Y345 797 aa14.6□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 A0A1B0GUH1 482 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 B4DGG1 531 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 RAB40ALP0C0E4 278 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 THEGLP0DJG4 465 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CTSEP14091 401 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CSRP1P21291 193 aaKnown RBP14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 RAD52P43351 418 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 CXCL12P48061 93 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 GABRA4P48169 554 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 SOX2P48431 317 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF81P51508 661 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MAZP56270 477 aaKnown RBP14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 RPL6Q02878 288 aaKnown RBP14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PLA2G7Q13093 441 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MFSD13AQ14CX5 517 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MESTQ5EB52 335 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TMEM69Q5SWH9 247 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 GPR139Q6DWJ6 353 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ZNF321PQ8N8H1 164 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 OR2T35Q8NGX2 323 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 RAB40AQ8WXH6 277 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PIGKQ92643 395 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MIB2Q96AX9 1013 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 FBXL3Q9UKT7 428 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PI4KAP42356 2102 aa14.59□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 RPS10-NUDT3A0A1W2PQS6 291 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TVP23AA6NH52 213 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 PCP4L1A6NKN8 68 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 H7C1C5 153 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 K7ESF4 209 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 ARPC1BO15143 372 aaKnown RBP14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 KHDRBS3O75525 346 aaKnown RBP14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 TMIGD3P0DMS9 266 aaPredicted RBP14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 MNDAP41218 407 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 BLVRAP53004 296 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 HSD17B7P56937 341 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 AP3S2P59780 193 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 LCN6P62502 163 aa14.58□□□□□ -0.07
MSH5-SAPCD1-208ENST00000498473 S100A12P80511 92 aa14.58□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms