RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 TMEM204Q9BSN7 226 aa14.36□□□□□ -0.11
SF3A1-209ENST00000496189 CHID1Q9BWS9 393 aa14.36□□□□□ -0.11
SF3A1-209ENST00000496189 REEP1Q9H902 201 aa14.36□□□□□ -0.11
SF3A1-209ENST00000496189 INIPQ9NRY2 104 aa14.36□□□□□ -0.11
SF3A1-209ENST00000496189 TAS2R5Q9NYW4 299 aa14.36□□□□□ -0.11
SF3A1-209ENST00000496189 PDZD2O15018 2839 aa14.36□□□□□ -0.11
SF3A1-209ENST00000496189 CSMD1Q96PZ7 3565 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 TRBV4-1A0A0J9YWV2 114 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 A0A1W2PPR1 153 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 TCRBV3S1A0A5B6 114 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 ZNF99A8MXY4 864 aaPredicted RBP14.35□□□□□ -0.11
SF3A1-209ENST00000496189 TNFRSF11BO00300 401 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 SMPD2O60906 423 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 IGHG1P01857 330 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 LOXP28300 417 aaPredicted RBP14.35□□□□□ -0.11
SF3A1-209ENST00000496189 CLRN1P58418 232 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 ARF1P84077 181 aaKnown RBP14.35□□□□□ -0.11
SF3A1-209ENST00000496189 RPL18Q07020 188 aaKnown RBP14.35□□□□□ -0.11
SF3A1-209ENST00000496189 GK3PQ14409 553 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 HIKESHIQ53FT3 197 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 OR2T5Q6IEZ7 315 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 ADAM5Q6NVV9 412 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 TBPL2Q6SJ96 375 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 SLC22A25Q6T423 547 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 TMPRSS11FQ6ZWK6 438 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 OAFQ86UD1 273 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 ZNF611Q8N823 705 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 OR4K5Q8NGD3 323 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 OR2T29Q8NH02 315 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 NANOS1Q8WY41 292 aaKnown RBP14.35□□□□□ -0.11
SF3A1-209ENST00000496189 SLC25A44Q96H78 314 aaPredicted RBP14.35□□□□□ -0.11
SF3A1-209ENST00000496189 TXNDC15Q96J42 360 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 C1QTNF6Q9BXI9 259 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 CXorf56Q9H5V9 222 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 MYO9AB2RTY4 2548 aa14.35□□□□□ -0.11
SF3A1-209ENST00000496189 ABCA4P78363 2273 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 SH3PXD2BA1X283 911 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 DPRXA6NFQ7 191 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 GNGT2O14610 69 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 OR10H3O60404 316 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 TMCC2O75069 709 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 PLAUP00749 431 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 F13BP05160 661 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 CD53P19397 219 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 FUT4P22083 530 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 AQP2P41181 271 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 HMGA2P52926 109 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 CDH11P55287 796 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 GABPB1Q06547 395 aaPredicted RBP14.34□□□□□ -0.11
SF3A1-209ENST00000496189 MELKQ14680 651 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 ZNF672Q499Z4 452 aaPredicted RBP14.34□□□□□ -0.11
SF3A1-209ENST00000496189 ALG10Q5BKT4 473 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 YTHDF3Q7Z739 585 aaKnown RBP14.34□□□□□ -0.11
SF3A1-209ENST00000496189 BCL2L2Q92843 193 aaPredicted RBP14.34□□□□□ -0.11
SF3A1-209ENST00000496189 RAB3IPQ96QF0 476 aaPredicted RBP14.34□□□□□ -0.11
SF3A1-209ENST00000496189 GLTPQ9NZD2 209 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 NPAP1Q9NZP6 1156 aa14.34□□□□□ -0.11
SF3A1-209ENST00000496189 SAMHD1Q9Y3Z3 626 aaKnown RBP14.34□□□□□ -0.11
SF3A1-209ENST00000496189 A0A096LPE4 126 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 ARPC4-TTLL3A0A0A6YYG9 625 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 A0A1W2PPZ6 126 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 ARHGEF9O43307 516 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 CST1P01037 141 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 MAKP20794 623 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 CD40P25942 277 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 GPR4P46093 362 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 ZNF84P51523 738 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 SEC23BQ15437 767 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 LINGO2Q7L985 606 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 C10orf67Q8IYJ2 551 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 WDR31Q8NA23 367 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 KBTBD8Q8NFY9 601 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 FAM46AQ96IP4 442 aaKnown RBP14.33□□□□□ -0.12
SF3A1-209ENST00000496189 FUZQ9BT04 418 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 CISD1Q9NZ45 108 aaKnown RBP14.33□□□□□ -0.12
SF3A1-209ENST00000496189 HIF3AQ9Y2N7 669 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 LYVE1Q9Y5Y7 322 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 CSMD2Q7Z408 3487 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 SPG11Q96JI7 2443 aa14.33□□□□□ -0.12
SF3A1-209ENST00000496189 CENPBD1B2RD01 187 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 FARS2O95363 451 aaKnown RBP14.32□□□□□ -0.12
SF3A1-209ENST00000496189 CRYAAP02489 173 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 LSM11P83369 360 aaKnown RBP eCLIP14.32□□□□□ -0.12
SF3A1-209ENST00000496189 ZBED5Q49AG3 693 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 FAM205BPQ63HN1 556 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 SEZ6L2Q6UXD5 910 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 SPNS3Q6ZMD2 512 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 ZNF813Q6ZN06 617 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 OR51A7Q8NH64 312 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 SLC38A2Q96QD8 506 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 FOXB1Q99853 325 aa14.32□□□□□ -0.12
SF3A1-209ENST00000496189 HRNRQ86YZ3 2850 aaPredicted RBP14.32□□□□□ -0.12
SF3A1-209ENST00000496189 UNC119BA6NIH7 251 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 NPIPB13A6NJU9 1138 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 NPIPB4C9JG80 1138 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 FKBP6O75344 327 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 CCNB2O95067 398 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 TSPAN19P0C672 248 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 ARR3P36575 388 aa14.31□□□□□ -0.12
SF3A1-209ENST00000496189 RPL4P36578 427 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms