RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TFPI2P48307 235 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 TDGF1P3P51864 188 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 CDH4P55283 916 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 ACVR1Q04771 509 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 KIAA0087Q14695 138 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 GNMTQ14749 295 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 CYTH1Q15438 398 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 ALKBH6Q3KRA9 238 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 LINC00483Q53H64 154 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 HSP90AB3PQ58FF7 597 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 PRAMEF5Q5TYX0 476 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 PRAMEF6Q5VXH4 476 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 Q5W150 140 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 C6orf89Q6UWU4 347 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 Q6ZSR3 168 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 NBPF5PQ86XG9 351 aaPredicted RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 EGFL6Q8IUX8 553 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 ZNF695Q8IW36 515 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 ACOT4Q8N9L9 421 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 FNDC5Q8NAU1 212 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 RAB3IL1Q8TBN0 382 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 FANK1Q8TC84 345 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 SLC22A8Q8TCC7 542 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 PYROXD1Q8WU10 500 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 NDRG1Q92597 394 aaKnown RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 CCDC77Q9BR77 488 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 RIOK1Q9BRS2 568 aaKnown RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 ING2Q9H160 280 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 GBA3Q9H227 469 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 PPA2Q9H2U2 334 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 ANKRA2Q9H9E1 313 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 IL26Q9NPH9 171 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 ETNK2Q9NVF9 386 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 KCNIP1Q9NZI2 227 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 ZNF835Q9Y2P0 537 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 CSDC2Q9Y534 153 aaKnown RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 SLC25A15Q9Y619 301 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 NPTNQ9Y639 398 aa1.47□□□□□ -2.17
CPSF3-205ENST00000489629 COL5A1P20908 1838 aaPredicted RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 DHX57Q6P158 1386 aaKnown RBP1.47□□□□□ -2.17
CPSF3-205ENST00000489629 CTAGE15A4D2H0 777 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 C12orf71A8MTZ7 269 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 SLC31A2O15432 143 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 TMEM50AO95807 157 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 FGF1P05230 155 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF286BP0CG31 522 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 SLC2A3P11169 496 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 MX1P20591 662 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 VHLP40337 213 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 SSR1P43307 286 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 GYG1P46976 350 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 NPBWR2P48146 333 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 SH3BGRP55822 239 aaPredicted RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 TGM3Q08188 693 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 MRPL28Q13084 256 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 PDIA2Q13087 525 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 SRSF5Q13243 272 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 PSG5Q15238 335 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 SF3A2Q15428 464 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 IMMTQ16891 758 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 RNASEKQ6P5S7 137 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 TRIM40Q6P9F5 258 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 SLC25A48Q6ZT89 311 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 UTS2BQ765I0 119 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 RUFY3Q7L099 469 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 NIPA1Q7RTP0 329 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 TAS2R42Q7RTR8 314 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 CTAGE6Q86UF2 777 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 TGIF2LXQ8IUE1 241 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 PSTKQ8IV42 348 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 UBE2J2Q8N2K1 259 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 ZNF615Q8N8J6 731 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 DUSP18Q8NEJ0 188 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 VN1R2Q8NFZ6 395 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 NPBQ8NG41 125 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 OR9K2Q8NGE7 335 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 KCNG3Q8TAE7 436 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 PLEKHA8Q96JA3 519 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 NAP1L5Q96NT1 182 aaPredicted RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 MS4A4EQ96PG1 132 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 PANX1Q96RD7 426 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 PELOQ9BRX2 385 aaKnown RBP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 NUP58Q9BVL2 599 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 TPK1Q9H3S4 243 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 SIAEQ9HAT2 523 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 GLRX2Q9NS18 164 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 CALYQ9NYX4 217 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 XCL2Q9UBD3 114 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 CTNNA3Q9UI47 895 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 PEX16Q9Y5Y5 336 aa1.46□□□□□ -2.18
CPSF3-205ENST00000489629 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.46□□□□□ -2.18
CPSF3-205ENST00000489629 PHLPP2Q6ZVD8 1323 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 CDHR2Q9BYE9 1310 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 PPIAL4EA0A075B759 164 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 CCDC169A6NNP5 214 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 KLHL41O60662 606 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 SLC25A27O95847 323 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 TSPAN13O95857 204 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 IGHV2-5P01817 119 aa1.45□□□□□ -2.18
CPSF3-205ENST00000489629 CRYGBP07316 175 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms