RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SERTAD2Q14140 314 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 TTLL10Q6ZVT0 673 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 OR2G2Q8NGZ5 317 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 LMX1AQ8TE12 382 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 RAB40AQ8WXH6 277 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 ZNF275Q9NSD4 429 aaPredicted RBP16.28■□□□□ 0.2
VIM-206ENST00000487938 RABL2AQ9UBK7 228 aaPredicted RBP16.28■□□□□ 0.2
VIM-206ENST00000487938 RABL2BQ9UNT1 228 aa16.28■□□□□ 0.2
VIM-206ENST00000487938 TRBV5-5A0A0J9YX44 114 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 OR4C45A6NMZ5 311 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 HCRTR2O43614 444 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 TGM6O95932 706 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 CENPAP49450 140 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 FAM209AQ5JX71 171 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 PRSS35Q8N3Z0 413 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 TMEM106AQ96A25 262 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 CCNL2Q96S94 520 aaPredicted RBP16.27■□□□□ 0.2
VIM-206ENST00000487938 LANCL2Q9NS86 450 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 PCDHGA5Q9Y5G8 931 aa16.27■□□□□ 0.2
VIM-206ENST00000487938 NAP1L6A6NFF2 107 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 RAD1O60671 282 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 TXNDC12O95881 172 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 PLGP00747 810 aaPredicted RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 RENP00797 406 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 ALOX5APP20292 161 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 MAPK3P27361 379 aaPredicted RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 LCN1P31025 176 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 ZNF117Q03924 483 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 COL13A1Q5TAT6 717 aaPredicted RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 PRAMEF17Q5VTA0 474 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 METTL11BQ5VVY1 283 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 MAMSTRQ6ZN01 415 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 RFPL4BQ6ZWI9 263 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 MARCH3Q86UD3 253 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 FTMTQ8N4E7 242 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 TTC9Q92623 222 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 ATOH1Q92858 354 aaPredicted RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 SLC25A36Q96CQ1 311 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 WDR89Q96FK6 387 aaPredicted RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 TPSD1Q9BZJ3 242 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 ZNF69Q9UC07 566 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 KCNG2Q9UJ96 466 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 NPTNQ9Y639 398 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 RNF215Q9Y6U7 377 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 CRYZL1O95825 349 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 NUDT14O95848 222 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 FCER2P06734 321 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 SNTA1Q13424 505 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 EXOSC2Q13868 293 aaKnown RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 CBFBQ13951 182 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 ELFN2Q5R3F8 820 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 GLB1L2Q8IW92 636 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 ANGPTL6Q8NI99 470 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 LCORQ96JN0 433 aaPredicted RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 KLHL15Q96M94 604 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 ZNF285Q96NJ3 590 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 NKX3-1Q99801 234 aaPredicted RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 COMMD4Q9H0A8 199 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 PDE7BQ9NP56 450 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 NPDC1Q9NQX5 325 aaPredicted RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 CA10Q9NS85 328 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 MGAT4CQ9UBM8 478 aa16.26■□□□□ 0.19
VIM-206ENST00000487938 PPIEQ9UNP9 301 aaKnown RBP16.26■□□□□ 0.19
VIM-206ENST00000487938 ACOT7O00154 380 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 CFDP00746 253 aaPredicted RBP16.25■□□□□ 0.19
VIM-206ENST00000487938 IGF2P01344 180 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 HLA-DQA2P01906 255 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 FBXO45P0C2W1 286 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 CXCR1P25024 350 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 RORAP35398 523 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 RPL6Q02878 288 aaKnown RBP16.25■□□□□ 0.19
VIM-206ENST00000487938 EEF1A1P5Q5VTE0 462 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 SEZ6L2Q6UXD5 910 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 SLC35D2Q76EJ3 337 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 PPP1R14AQ96A00 147 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 SLC46A1Q96NT5 459 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 INTS14Q96SY0 518 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 ADAM19Q9H013 955 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 CLEC4MQ9H2X3 399 aaPredicted RBP16.25■□□□□ 0.19
VIM-206ENST00000487938 EXOSC3Q9NQT5 275 aaKnown RBP16.25■□□□□ 0.19
VIM-206ENST00000487938 TAS2R5Q9NYW4 299 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 BRWD1Q9NSI6 2320 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 A0A1B0GTQ1 180 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 A0A1B0GUH1 482 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 LINC00862A6NCI5 91 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 H0YIG0 161 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 PRAF2O60831 178 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 FASLGP48023 281 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 TSPAN5P62079 268 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 ZP2Q05996 745 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 DMWDQ09019 674 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 EMC4Q5J8M3 183 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 LRRN1Q6UXK5 716 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 GLDNQ6ZMI3 551 aaPredicted RBP16.25■□□□□ 0.19
VIM-206ENST00000487938 SIX5Q8N196 739 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 EID2Q8N6I1 236 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 SMRP1Q8NCR6 262 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 MRI1Q9BV20 369 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 KCNK15Q9H427 330 aa16.25■□□□□ 0.19
VIM-206ENST00000487938 DHCR7Q9UBM7 475 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms