RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 GLYR1Q49A26 553 aaPredicted RBP12.72□□□□□ -0.37
CUX1-209ENST00000487284 LIPKQ5VXJ0 399 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 TMPRSS11AQ6ZMR5 421 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 GDPGP1Q6ZNW5 385 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 GHDCQ8N2G8 530 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 OR51L1Q8NGJ5 315 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 OR5M1Q8NGP8 315 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 OR2T4Q8NH00 348 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 SPRYD4Q8WW59 207 aaPredicted RBP12.72□□□□□ -0.37
CUX1-209ENST00000487284 UBL7Q96S82 380 aaPredicted RBP12.72□□□□□ -0.37
CUX1-209ENST00000487284 CHCHD6Q9BRQ6 235 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 ALG12Q9BV10 488 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 ZFP64Q9NPA5 681 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 BOKQ9UMX3 212 aaPredicted RBP12.72□□□□□ -0.37
CUX1-209ENST00000487284 TP53TG5Q9Y2B4 290 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 HDGFL3Q9Y3E1 203 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 PCDHGB7Q9Y5F8 929 aa12.72□□□□□ -0.37
CUX1-209ENST00000487284 SPENQ96T58 3664 aaKnown RBP12.72□□□□□ -0.37
CUX1-209ENST00000487284 TLN1Q9Y490 2541 aaKnown RBP12.72□□□□□ -0.37
CUX1-209ENST00000487284 A0A1W2PNV4 684 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 A0A1W2PRG6 482 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 KLRC4-KLRK1H3BQV0 150 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 XKRYO14609 159 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 ZIC3O60481 467 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 GPX5O75715 221 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 PLGP00747 810 aaPredicted RBP12.71□□□□□ -0.37
CUX1-209ENST00000487284 OR2T7P0C7T2 308 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 FAM87AP0C7U9 286 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 PSMA1P25786 263 aaKnown RBP12.71□□□□□ -0.37
CUX1-209ENST00000487284 SHC1P29353 583 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 PYCR1P32322 319 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 ACVR1BP36896 505 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 ZNF239Q16600 458 aaKnown RBP12.71□□□□□ -0.37
CUX1-209ENST00000487284 LINC00303Q3SY05 128 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 EEF1A1P5Q5VTE0 462 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.71□□□□□ -0.37
CUX1-209ENST00000487284 SLC35F2Q8IXU6 374 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 KBTBD8Q8NFY9 601 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 OR2T27Q8NH04 317 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 RELTQ969Z4 430 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 ZHX1-C8orf76Q96EF9 292 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 TBX5Q99593 518 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 CENPOQ9BU64 300 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 TTTY12Q9BZ98 90 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 DCSTAMPQ9H295 470 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 PRORYQ9H606 182 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 DKKL1Q9UK85 242 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 STUB1Q9UNE7 303 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 NOX1Q9Y5S8 564 aa12.71□□□□□ -0.37
CUX1-209ENST00000487284 LOC100506127A0A0U1RQW1 187 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 A0A1W2PQL4 384 aaPredicted RBP12.7□□□□□ -0.38
CUX1-209ENST00000487284 PRSS37A4D1T9 235 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 H7C1C5 153 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 DCTN6O00399 190 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 ARHGEF9O43307 516 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 SRD5A2P31213 254 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 TGFBR1P36897 503 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 CRYBB2P43320 205 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 CAPZA2P47755 286 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 RPS3AP61247 264 aaKnown RBP12.7□□□□□ -0.38
CUX1-209ENST00000487284 LCN6P62502 163 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 TUBA1BP68363 451 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 PMP22Q01453 160 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 C19orf57Q0VDD7 668 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 Q6ZS92 163 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 USP43Q70EL4 1123 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 TUBA1AQ71U36 451 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 RBMXL3Q8N7X1 1067 aaKnown RBP12.7□□□□□ -0.38
CUX1-209ENST00000487284 OR6K6Q8NGW6 343 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 ASB10Q8WXI3 467 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 UFD1Q92890 307 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 TSSK2Q96PF2 358 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 OR5B2Q96R09 309 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 MFRPQ9BY79 579 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 SYT4Q9H2B2 425 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 TMEM185BQ9H7F4 350 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 ISG20L2Q9H9L3 353 aaKnown RBP12.7□□□□□ -0.38
CUX1-209ENST00000487284 VSX1Q9NZR4 365 aaPredicted RBP12.7□□□□□ -0.38
CUX1-209ENST00000487284 TRAPPC4Q9Y296 219 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 SF3B6Q9Y3B4 125 aaKnown RBP12.7□□□□□ -0.38
CUX1-209ENST00000487284 FKBP7Q9Y680 259 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 NBEAQ8NFP9 2946 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 BSNQ9UPA5 3926 aa12.7□□□□□ -0.38
CUX1-209ENST00000487284 OR2M5A3KFT3 312 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 A6NIZ1 184 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 SELENOFO60613 162 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 CLPXO76031 633 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 AKR7A3O95154 331 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 MT-ND5P03915 603 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 HLA-DOBP13765 273 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 GDF1P27539 372 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 NAA10P41227 235 aaPredicted RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 DAP3P51398 398 aaKnown RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 RAP1BP61224 184 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 RAP1AP62834 184 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 HSF1Q00613 529 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 HSF2Q03933 536 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 ZNF169Q14929 603 aaPredicted RBP12.69□□□□□ -0.38
CUX1-209ENST00000487284 TOMM20Q15388 145 aa12.69□□□□□ -0.38
CUX1-209ENST00000487284 SOWAHCQ53LP3 525 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms