RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 YWHAGP61981 247 aaKnown RBP eCLIP3.7□□□□□ -1.82
UPF3B-203ENST00000478840 ADARB1P78563 741 aaKnown RBP3.7□□□□□ -1.82
UPF3B-203ENST00000478840 PGGHGQ32M88 737 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 PLCXD3Q63HM9 321 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 PEX26Q7Z412 305 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 KIR2DL5AQ8N109 375 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 OR9G1Q8NH87 305 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 KIR2DL5BQ8NHK3 375 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 SPATA3Q8NHX4 192 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 NEIL3Q8TAT5 605 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 DUS3LQ96G46 650 aaKnown RBP3.7□□□□□ -1.82
UPF3B-203ENST00000478840 RARRES2Q99969 163 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 PYGO2Q9BRQ0 406 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 SRMSQ9H3Y6 488 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 PLGRKTQ9HBL7 147 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 TNFRSF19Q9NS68 423 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 PTTG3PQ9NZH4 202 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 MTCH1Q9NZJ7 389 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 UXTQ9UBK9 157 aaPredicted RBP3.7□□□□□ -1.82
UPF3B-203ENST00000478840 NAP1L2Q9ULW6 460 aaPredicted RBP3.7□□□□□ -1.82
UPF3B-203ENST00000478840 VSIG4Q9Y279 399 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 CNTNAP1P78357 1384 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 A0A0J9YXY3 114 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 BOLA2-SMG1P6H3BVE0 249 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 TRDMT1O14717 391 aaKnown RBP3.69□□□□□ -1.82
UPF3B-203ENST00000478840 BBOX1O75936 387 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 GAS8-AS1O95177 125 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 SUB1P53999 127 aaKnown RBP eCLIP3.69□□□□□ -1.82
UPF3B-203ENST00000478840 CLDN18P56856 261 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 DSCR10P59022 87 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 ZNF92Q03936 586 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 ARFRP1Q13795 201 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 BEX5Q5H9J7 111 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 AGBL2Q5U5Z8 902 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 STUMQ69YW2 141 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 TTC19Q6DKK2 380 aaPredicted RBP3.69□□□□□ -1.82
UPF3B-203ENST00000478840 CTRB2Q6GPI1 263 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 SCARA5Q6ZMJ2 495 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 ZADH2Q8N4Q0 377 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 EID2Q8N6I1 236 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 ZNF321PQ8N8H1 164 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 C8orf31Q8N9H6 132 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 OR9G4Q8NGQ1 327 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 DTX3LQ8TDB6 740 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 CXorf40AQ8TE69 158 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 ARPC1AQ92747 370 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 UCN3Q969E3 161 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 TMEM54Q969K7 222 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 XPO6Q96QU8 1125 aaKnown RBP3.69□□□□□ -1.82
UPF3B-203ENST00000478840 PLEKHF1Q96S99 279 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 OR51J1Q9H342 316 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 CLSTN2Q9H4D0 955 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 NTN4Q9HB63 628 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 SLC7A10Q9NS82 523 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 SLC17A4Q9Y2C5 497 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 CDH10Q9Y6N8 788 aa3.69□□□□□ -1.82
UPF3B-203ENST00000478840 MSH6P52701 1360 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 A0A0G2JLM5 398 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 ZNF726A6NNF4 738 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 USP27XA6NNY8 438 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 PPP1R2P9O14990 202 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 SLC31A2O15432 143 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 EIF4E2O60573 245 aaKnown RBP3.68□□□□□ -1.82
UPF3B-203ENST00000478840 SRSF10O75494 262 aaKnown RBP3.68□□□□□ -1.82
UPF3B-203ENST00000478840 FGFR1OPO95684 399 aaKnown RBP3.68□□□□□ -1.82
UPF3B-203ENST00000478840 OTCP00480 354 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 PLEKP08567 350 aaPredicted RBP3.68□□□□□ -1.82
UPF3B-203ENST00000478840 BCKDHBP21953 392 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 GABRR1P24046 479 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 FMO3P31513 532 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 DAOAP59103 153 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 RAB11AP62491 216 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 IRF8Q02556 426 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 RAB11BQ15907 218 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 NKAIN1Q4KMZ8 207 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 HIKESHIQ53FT3 197 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 SOHLH1Q5JUK2 328 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 PPM1LQ5SGD2 360 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 ANKRD26P1Q6NSI1 321 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 PNKDQ8N490 385 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 HSD17B11Q8NBQ5 300 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 ZNF740Q8NDX6 193 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 C16orf74Q96GX8 76 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 PKNOX2Q96KN3 472 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 B3GALT6Q96L58 329 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 SH3GL3Q99963 347 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 NRIP2Q9BQI9 281 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 OR11A1Q9GZK7 315 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 BLZF1Q9H2G9 400 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 SIAEQ9HAT2 523 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 AHSPQ9NZD4 102 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 GNPTGQ9UJJ9 305 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 ING4Q9UNL4 249 aa3.68□□□□□ -1.82
UPF3B-203ENST00000478840 COL22A1Q8NFW1 1626 aaPredicted RBP3.67□□□□□ -1.82
UPF3B-203ENST00000478840 ARPC4-TTLL3A0A0A6YYG9 625 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 IGKV1D-13A0A0B4J2D9 117 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 E7ENQ6 273 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 MMP23AO75900 390 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 CLIC3O95833 236 aa3.67□□□□□ -1.82
UPF3B-203ENST00000478840 HPNP05981 417 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms