RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 CNIH2Q6PI25 160 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 OPN5Q6U736 354 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 PXKQ7Z7A4 578 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 KDM8Q8N371 416 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 OR2T4Q8NH00 348 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 OR6S1Q8NH40 331 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 MRGPRX4Q96LA9 322 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 PDCD1LG2Q9BQ51 273 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 TXNIPQ9H3M7 391 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 MALT1Q9UDY8 824 aa16.44■□□□□ 0.22
COL9A3-205ENST00000466192 LINC00854A0A1B0GVQ3 168 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 CD63P08962 238 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 CFL1P23528 166 aaKnown RBP16.43■□□□□ 0.22
COL9A3-205ENST00000466192 SPEM2Q0P670 501 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 OR7A5Q15622 319 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 PYDC2Q56P42 97 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 EEF1A1P5Q5VTE0 462 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 MZT2AQ6P582 158 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 RPL22L1Q6P5R6 122 aaKnown RBP16.43■□□□□ 0.22
COL9A3-205ENST00000466192 CCBE1Q6UXH8 406 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-205ENST00000466192 SLC16A9Q7RTY1 509 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 MFSD8Q8NHS3 518 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 DDIT4LQ96D03 193 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 MRPL48Q96GC5 212 aaKnown RBP16.43■□□□□ 0.22
COL9A3-205ENST00000466192 FRMD6Q96NE9 622 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 A0A1W2PQ09 198 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 MS4A18H0YCH9 400 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 H3BML4 177 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 XKRYO14609 159 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 GPANK1O95872 356 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 APOA1P02647 267 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 FREM3P0C091 2139 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 HLA-DOBP13765 273 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 HSF2Q03933 536 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 TAB1Q15750 504 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 MS4A18Q3C1V0 323 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 RPS19BP1Q86WX3 136 aaKnown RBP16.43■□□□□ 0.22
COL9A3-205ENST00000466192 TIGD4Q8IY51 512 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 FADS6Q8N9I5 356 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 OR5M1Q8NGP8 315 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 FOXJ2Q9P0K8 574 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 KLHDC2Q9Y2U9 406 aa16.43■□□□□ 0.22
COL9A3-205ENST00000466192 MT-CO3P00414 261 aa16.42■□□□□ 0.22
COL9A3-205ENST00000466192 IGHMP01871 453 aa16.42■□□□□ 0.22
COL9A3-205ENST00000466192 RPS27P42677 84 aaKnown RBP16.42■□□□□ 0.22
COL9A3-205ENST00000466192 SSR4P51571 173 aa16.42■□□□□ 0.22
COL9A3-205ENST00000466192 MLF1P58340 268 aa16.42■□□□□ 0.22
COL9A3-205ENST00000466192 SNTA1Q13424 505 aa16.42■□□□□ 0.22
COL9A3-205ENST00000466192 HBMQ6B0K9 141 aa16.42■□□□□ 0.22
COL9A3-205ENST00000466192 SUMF1Q8NBK3 374 aa16.42■□□□□ 0.22
COL9A3-205ENST00000466192 C17orf50Q8WW18 174 aa16.42■□□□□ 0.22
COL9A3-205ENST00000466192 FARSAQ9Y285 508 aaKnown RBP16.42■□□□□ 0.22
COL9A3-205ENST00000466192 PRSS37A4D1T9 235 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 CSF3P09919 207 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 RAB40ALP0C0E4 278 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 CCL3P10147 92 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 TFPIP10646 304 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 APEX1P27695 318 aaKnown RBP16.41■□□□□ 0.22
COL9A3-205ENST00000466192 Q0VFX4 171 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 CCDC58Q4VC31 144 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 DHRS13Q6UX07 377 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 GDPD1Q8N9F7 314 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 OR6N2Q8NGY6 317 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 NXPE2Q96DL1 559 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 ADAD1Q96M93 576 aaKnown RBP16.41■□□□□ 0.22
COL9A3-205ENST00000466192 OR14A2Q96R54 314 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 CDC6Q99741 560 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 WDR76Q9H967 626 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 SERPINA3P01011 423 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 S100A1P23297 94 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 EVX1P49640 407 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 MAP2K6P52564 334 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 RPS11P62280 158 aaKnown RBP eCLIP16.41■□□□□ 0.22
COL9A3-205ENST00000466192 PUDPQ08623 228 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 C19orf57Q0VDD7 668 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 MELKQ14680 651 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 MFSD13AQ14CX5 517 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 P2RY14Q15391 338 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 ZNF684Q5T5D7 378 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 SFXN4Q6P4A7 337 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 TMEM81Q6P7N7 255 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 ARMC10Q8N2F6 343 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 OR4K17Q8NGC6 315 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 POTEKPQ9BYX7 375 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 PROK2Q9HC23 129 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 OTOGLQ3ZCN5 2332 aa16.41■□□□□ 0.22
COL9A3-205ENST00000466192 LIPT2A6NK58 231 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 RPP14O95059 124 aaKnown RBP16.4■□□□□ 0.22
COL9A3-205ENST00000466192 AKR7A3O95154 331 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 OR8G3PP0DMU2 310 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 SCN1BQ07699 218 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 ZP4Q12836 540 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 IL18Q14116 193 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 SSPNQ14714 243 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 OTPQ5XKR4 325 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 H1FNTQ75WM6 255 aaPredicted RBP16.4■□□□□ 0.22
COL9A3-205ENST00000466192 SPATC1Q76KD6 591 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 DPY19L4Q7Z388 723 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 NRARPQ7Z6K4 114 aa16.4■□□□□ 0.22
COL9A3-205ENST00000466192 SYT9Q86SS6 491 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms