RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 C2CD4CQ8TF44 421 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 NPRL2Q8WTW4 380 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 NUDCD2Q8WVJ2 157 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 CRYGNQ8WXF5 182 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 MYLPFQ96A32 169 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 CTHRC1Q96CG8 243 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 SFRP2Q96HF1 295 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TNFRSF13CQ96RJ3 184 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TIMM29Q9BSF4 260 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 MSTO1Q9BUK6 570 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 SNHG12Q9BXW3 62 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 CADM1Q9BY67 442 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 TBL1XR1Q9BZK7 514 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 NXF2Q9GZY0 626 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 PLEKHA1Q9HB21 404 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 ISYNA1Q9NPH2 558 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 NECAP2Q9NVZ3 263 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 RCC2Q9P258 522 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 HEY2Q9UBP5 337 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 NEU3Q9UQ49 428 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 RBM7Q9Y580 266 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 ARL5AQ9Y689 179 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 PRSS21Q9Y6M0 314 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 PLXNA3P51805 1871 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 NCANO14594 1321 aa4.35□□□□□ -1.71
CCDC88A-209ENST00000456975 NLRC5Q86WI3 1866 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 A0A096LPI6 279 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 C20orf202A1L168 122 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 ANHXE9PGG2 379 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 RFXAPO00287 272 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 PDXKO00764 312 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 EPHB6O15197 1021 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 XRCC2O43543 280 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 HPGDSO60760 199 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SH3BGRLO75368 114 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 RCBTB2O95199 551 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SERPINE2P07093 398 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SNRPCP09234 159 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 EBLN1P0CF75 366 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 ADORA3P0DMS8 318 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 HOXB2P14652 356 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 NCK1P16333 377 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 TSPAN8P19075 237 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SDC4P31431 198 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SSTR5P35346 364 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 ADRA1AP35348 466 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 BRCC3P46736 316 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 RFX3P48380 749 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 RABGGTBP53611 331 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 CDKN2DP55273 166 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SRSF3P84103 164 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 CDKL1Q00532 357 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 HMGCS1Q01581 520 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SRSF6Q13247 344 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 MAD2L1Q13257 205 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 CCNIQ14094 377 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 EFNB3Q15768 340 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 VAMP3Q15836 100 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 RBBP7Q16576 425 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 UBE2SQ16763 222 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 TATDN3Q17R31 274 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 ASTE1Q2TB18 679 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SCGB2B2Q4G0G5 96 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 PTPN20Q4JDL3 420 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 CTSL3PQ5NE16 218 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 OR2G6Q5TZ20 316 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC27A1Q6PCB7 646 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 HAGHLQ6PII5 290 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF620Q6ZNG0 422 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 LANCL3Q6ZV70 420 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SERPINA9Q86WD7 417 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 CIR1Q86X95 450 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 CRLF3Q8IUI8 442 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM219AQ8IW50 185 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 FBXO16Q8IX29 292 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SKA3Q8IX90 412 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 AMER2Q8N7J2 671 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 ZSCAN4Q8NAM6 433 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 OR2AK2Q8NG84 335 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 OR5L2Q8NGL0 311 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 OR10X1Q8NGY0 326 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 OR5J2Q8NH18 312 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 OR4C6Q8NH72 309 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 FAR1Q8WVX9 515 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 ST8SIA1Q92185 356 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 MAGOHBQ96A72 148 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 PTH2Q96A98 100 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 TLCD1Q96CP7 247 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 GPR78Q96P69 363 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 FSD1LQ9BXM9 530 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 TPSD1Q9BZJ3 242 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 HRH4Q9H3N8 390 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 PLK3Q9H4B4 646 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 CXorf21Q9HAI6 301 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 IL1RL2Q9HB29 575 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 HHATLQ9HCP6 504 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 DNAJC4Q9NNZ3 241 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 CD320Q9NPF0 282 aa4.34□□□□□ -1.71
CCDC88A-209ENST00000456975 SAR1AQ9NR31 198 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms