RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TSPAN10Q9H1Z9 355 aaPredicted RBP13.62□□□□□ -0.23
LDLR-202ENST00000455727 TCF7L1Q9HCS4 588 aa13.62□□□□□ -0.23
LDLR-202ENST00000455727 PAQR5Q9NXK6 330 aaPredicted RBP13.62□□□□□ -0.23
LDLR-202ENST00000455727 VSX1Q9NZR4 365 aaPredicted RBP13.62□□□□□ -0.23
LDLR-202ENST00000455727 IKZF2Q9UKS7 526 aa13.62□□□□□ -0.23
LDLR-202ENST00000455727 PPIEQ9UNP9 301 aaKnown RBP13.62□□□□□ -0.23
LDLR-202ENST00000455727 MRPS7Q9Y2R9 242 aaKnown RBP13.62□□□□□ -0.23
LDLR-202ENST00000455727 C7orf66A4D0T2 115 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 SULT1B1O43704 296 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 ZNF254O75437 659 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 C1QBP02746 253 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 RAB40ALP0C0E4 278 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 ANKRD34CP0C6C1 535 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 RAG2P55895 527 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 RASGEF1BQ0VAM2 473 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 ACKR1Q16570 336 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 HES5Q5TA89 166 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 CHRDL2Q6WN34 429 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 EID2Q8N6I1 236 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 ZNF433Q8N7K0 673 aaPredicted RBP13.61□□□□□ -0.23
LDLR-202ENST00000455727 NFAM1Q8NET5 270 aaPredicted RBP13.61□□□□□ -0.23
LDLR-202ENST00000455727 RAB40AQ8WXH6 277 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 ASB17Q8WXJ9 295 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 TMEM234Q8WY98 164 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 THRSPQ92748 146 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 SLC25A36Q96CQ1 311 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 ORAI1Q96D31 301 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 SCMH1Q96GD3 660 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 SMAD5Q99717 465 aaKnown RBP13.61□□□□□ -0.23
LDLR-202ENST00000455727 COMMD4Q9H0A8 199 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 PLEKHA1Q9HB21 404 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 MCUBQ9NWR8 336 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 AKAP7Q9P0M2 348 aaPredicted RBP13.61□□□□□ -0.23
LDLR-202ENST00000455727 CACNA1EQ15878 2313 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 TRBV5-7A0A0A0MS05 114 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 C11orf98E9PRG8 122 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 PLPP3O14495 311 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 TPPPO94811 219 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 WISP1O95388 367 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 TCRBP04435 133 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 TCEA1P23193 301 aaKnown RBP13.61□□□□□ -0.23
LDLR-202ENST00000455727 GZMKP49863 264 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 MAB21L1Q13394 359 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 ZNF574Q6ZN55 896 aaPredicted RBP13.61□□□□□ -0.23
LDLR-202ENST00000455727 ESPNLQ6ZVH7 1005 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 APCDD1LQ8NCL9 501 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 THEM6Q8WUY1 208 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 NSMAFQ92636 917 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 GFM1Q96RP9 751 aaKnown RBP13.61□□□□□ -0.23
LDLR-202ENST00000455727 DUSP23Q9BVJ7 150 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 SLC7A5P2Q9GIP4 190 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 MRPL39Q9NYK5 338 aaKnown RBP13.61□□□□□ -0.23
LDLR-202ENST00000455727 ETV7Q9Y603 341 aa13.61□□□□□ -0.23
LDLR-202ENST00000455727 USP34Q70CQ2 3546 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 TRABD2BA6NFA1 517 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 FAM47E-STBD1D6RA91 191 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 AHSA1O95433 338 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 MAGEB1P43366 347 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 SCAND1P57086 179 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 FAPQ12884 760 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 KLF9Q13886 244 aaPredicted RBP13.6□□□□□ -0.23
LDLR-202ENST00000455727 LRRN1Q6UXK5 716 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 ANKRD37Q7Z713 158 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 CEP76Q8TAP6 659 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 ZNF417Q8TAU3 575 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 NUBPLQ8TB37 319 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 ST8SIA1Q92185 356 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 SLC25A38Q96DW6 304 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 DCBLD2Q96PD2 775 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 SLA2Q9H6Q3 261 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 LIN7BQ9HAP6 207 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 GALNT9Q9HCQ5 603 aa13.6□□□□□ -0.23
LDLR-202ENST00000455727 A0A0A6YYJ9 748 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 OR6A2O95222 327 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 DLX5P56178 289 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 DMWDQ09019 674 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 C17orf67Q0P5P2 114 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 TNK1Q13470 666 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 COL28A1Q2UY09 1125 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 PWWP2BQ6NUJ5 590 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 UTS2BQ765I0 119 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 FCRLAQ7L513 359 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 TMPRSS9Q7Z410 1059 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 LRRTM1Q86UE6 522 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 CDH24Q86UP0 819 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 GPR148Q8TDV2 347 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 S100A16Q96FQ6 103 aaKnown RBP13.59□□□□□ -0.23
LDLR-202ENST00000455727 OR8B4Q96RC9 309 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 TMEM246Q9BRR3 403 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 GTPBP2Q9BX10 602 aaKnown RBP13.59□□□□□ -0.23
LDLR-202ENST00000455727 CACNG6Q9BXT2 260 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 GHITMQ9H3K2 345 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 NUDT15Q9NV35 164 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 ALPK2Q86TB3 2170 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 A0A087WV48 116 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 IGLV1-36A0A0B4J1U3 117 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 ANKUB1A6NFN9 424 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 CENPBD1B2RD01 187 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 GABARAPH6UMI1 98 aa13.59□□□□□ -0.23
LDLR-202ENST00000455727 ZNF593O00488 134 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms