RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 HLA-DOBP13765 273 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 CRABP1P29762 137 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 FMO3P31513 532 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 GUCA1AP43080 201 aaPredicted RBP12.66□□□□□ -0.38
SKA1-202ENST00000398452 CASP6P55212 293 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 CDH11P55287 796 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 SLC17A1Q14916 467 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 ABLIM2Q6H8Q1 611 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 OR2A2Q6IF42 318 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 NIPAL3Q6P499 406 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 CREB3L2Q70SY1 520 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 AAED1Q7RTV5 226 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 FAM122BQ7Z309 247 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 CCDC71Q8IV32 467 aaPredicted RBP12.66□□□□□ -0.38
SKA1-202ENST00000398452 OR6X1Q8NH79 312 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 FNDC9Q8TBE3 224 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 RNF128Q8TEB7 428 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 ASB10Q8WXI3 467 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 UBE2FQ969M7 185 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 ALG12Q9BV10 488 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 OR51V1Q9H2C8 321 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 RERGLQ9H628 205 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 B3GAT2Q9NPZ5 323 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 GLRX2Q9NS18 164 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 ASB6Q9NWX5 421 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 UBAP1Q9NZ09 502 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 DNAJC27Q9NZQ0 273 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 B3GAT1Q9P2W7 334 aa12.66□□□□□ -0.38
SKA1-202ENST00000398452 NOSIPQ9Y314 301 aaKnown RBP12.66□□□□□ -0.38
SKA1-202ENST00000398452 PRSS37A4D1T9 235 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 SLC35F4A4IF30 521 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 FAM183AA6NL82 134 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 CENPBD1B2RD01 187 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 ZNF814B7Z6K7 855 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 ENTPD6O75354 484 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 SLC43A1O75387 559 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 SMNDC1O75940 238 aaKnown RBP eCLIP12.65□□□□□ -0.38
SKA1-202ENST00000398452 KRT33AO76009 404 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 CCDC159P0C7I6 412 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 EDN3P14138 238 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 CSNK1A1P48729 337 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 CENPAP49450 140 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 P2RY4P51582 365 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 BLVRAP53004 296 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 PER3P56645 1201 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 TMED1Q13445 227 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 IGFBP7Q16270 282 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 MESTQ5EB52 335 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 SLC25A30Q5SVS4 291 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 ARMC4Q5T2S8 1044 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 CARD17Q5XLA6 110 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 CD163Q86VB7 1156 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 CYB561A3Q8NBI2 242 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 ZNF540Q8NDQ6 660 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 PROKR2Q8NFJ6 384 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 ZNF519Q8TB69 540 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 FAM57AQ8TBR7 257 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 ABHD3Q8WU67 409 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 INTS12Q96CB8 462 aaKnown RBP12.65□□□□□ -0.38
SKA1-202ENST00000398452 SLC25A44Q96H78 314 aaPredicted RBP12.65□□□□□ -0.38
SKA1-202ENST00000398452 TM9SF2Q99805 663 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 EMC6Q9BV81 110 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 GP6Q9HCN6 339 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 CCNB1IP1Q9NPC3 277 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 HINT3Q9NQE9 182 aaKnown RBP12.65□□□□□ -0.38
SKA1-202ENST00000398452 RPRD1BQ9NQG5 326 aaKnown RBP12.65□□□□□ -0.38
SKA1-202ENST00000398452 ASF1BQ9NVP2 202 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 RCE1Q9Y256 329 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 SNX5Q9Y5X3 404 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 DOPEY2Q9Y3R5 2298 aa12.65□□□□□ -0.38
SKA1-202ENST00000398452 MAGEA13PA6NCF6 341 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 EFCAB10A6NFE3 127 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 OR6C65A6NJZ3 312 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 ZNF724A8MTY0 619 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 KDM4EB2RXH2 506 aaPredicted RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 SLC1A7O00341 560 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 TRAF3IP2O43734 574 aaPredicted RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 RAMP1O60894 148 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 MRPL33O75394 65 aaKnown RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 TRMUO75648 421 aaKnown RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 SLC25A1P53007 311 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 CAMK2DQ13557 499 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 KLHL22Q53GT1 634 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 SLC35D3Q5M8T2 416 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 ZNF324BQ6AW86 544 aaPredicted RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 UGT2A3Q6UWM9 527 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 MEPCEQ7L2J0 689 aaKnown RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 GPR137CQ8N3F9 429 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 STX19Q8N4C7 294 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 NOXO1Q8NFA2 376 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 OR9Q1Q8NGQ5 310 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 CPT1CQ8TCG5 803 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 FBLIM1Q8WUP2 373 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 IPCEF1Q8WWN9 437 aaPredicted RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 MYDGFQ969H8 173 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 TXNDC15Q96J42 360 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 ZNF582Q96NG8 517 aaPredicted RBP12.64□□□□□ -0.39
SKA1-202ENST00000398452 SLX1AQ9BQ83 275 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 SYT4Q9H2B2 425 aa12.64□□□□□ -0.39
SKA1-202ENST00000398452 TP63Q9H3D4 680 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms