RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 MBD2Q9UBB5 411 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 TRAV1-2A0A0B4J238 106 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 A0A0B4J2A0 478 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 TMEM72A0PK05 275 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 ELOA3DA6NLF2 546 aaPredicted RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 SNRPGP15A8MWD9 76 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 J3QRE1 110 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 IGFALSP35858 605 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 EFNB2P52799 333 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 CAPZA1P52907 286 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 IKZF1Q13422 519 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 ELOA3BQ3SY89 546 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 INO80EQ8NBZ0 244 aaPredicted RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 ELOA3Q8NG57 546 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 OR52E1Q8NGJ3 308 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 TSEN15Q8WW01 171 aaKnown RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 ZNRF4Q8WWF5 429 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 MS4A6EQ96DS6 147 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 SCARF2Q96GP6 870 aaPredicted RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 Q96M85 177 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 TLNRD1Q9H1K6 362 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 SLC25A32Q9H2D1 315 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 TMEM27Q9HBJ8 222 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 SHPKQ9UHJ6 478 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 EPOPA6NHQ4 379 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 HMSDA8MTL9 139 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 H7C1C5 153 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 PLRG1O43660 514 aaKnown RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 NPBWR1P48145 328 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 EPHA4P54764 986 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 LCN6P62502 163 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 RPS21P63220 83 aaKnown RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 TRMT12Q53H54 448 aaKnown RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 GLT8D1Q68CQ7 371 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 TMED6Q8WW62 240 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 RASD2Q96D21 266 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 ADAD1Q96M93 576 aaKnown RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 SLC17A9Q9BYT1 436 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 MTHFD2LQ9H903 347 aaPredicted RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 PRMT8Q9NR22 394 aaPredicted RBP12.64□□□□□ -0.39
SDC1-202ENST00000381150 NCDNQ9UBB6 729 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 ZNF337Q9Y3M9 751 aa12.64□□□□□ -0.39
SDC1-202ENST00000381150 LINC01565O15544 149 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 HLA-AP01891 365 aaKnown RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 DCNP07585 359 aaKnown RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 ZNF28P17035 718 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 NANOS3P60323 173 aaKnown RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 OR1J2Q8NGS2 313 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 IGFLR1Q9H665 355 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 SPHK1Q9NYA1 384 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 SIGLEC7Q9Y286 467 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 A0A1W2PQU0 124 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 TMEM218A2RU14 115 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 CACNB4O00305 520 aaPredicted RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 CTNSO60931 367 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 NDUFS6O75380 124 aaKnown RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 UBBP0CG47 229 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 UBCP0CG48 685 aaKnown RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 DPP4P27487 766 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 GDI1P31150 447 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 RPS27AP62979 156 aaKnown RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 UBA52P62987 128 aaKnown RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 DEFB134Q4QY38 66 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 TMEM35AQ53FP2 167 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 AVPI1Q5T686 147 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 ARHGAP40Q5TG30 622 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 OVCH1Q7RTY7 1134 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 FAM220AQ7Z4H9 259 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 OR1M1Q8NGA1 313 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 OR6K3Q8NGY3 331 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 RXFP4Q8TDU9 374 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 GFI1Q99684 422 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 DZANK1Q9NVP4 752 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 DHCR7Q9UBM7 475 aaKnown RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 CES1P1Q9UKY3 287 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 LDB3O75112 727 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 NDUFS1P28331 727 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 CD34P28906 385 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 MPGP29372 298 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 PPT1P50897 306 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 CCR4P51679 360 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 ATP1B3P54709 279 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 RPS11P62280 158 aaKnown RBP eCLIP12.63□□□□□ -0.39
SDC1-202ENST00000381150 GAS6Q14393 721 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 TGIF1Q15583 401 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 ITPRIPL2Q3MIP1 535 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 PLEKHN1Q494U1 663 aaPredicted RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 RPL22L1Q6P5R6 122 aaKnown RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 ABHD17CQ6PCB6 329 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 POMZP3Q6PJE2 187 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 ASPGQ86U10 573 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 SHISA5Q8N114 240 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 OR10AC1Q8NH08 325 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 ZPLD1Q8TCW7 415 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 PPP1R1CQ8WVI7 109 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 TMEM106AQ96A25 262 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 SLC19A3Q9BZV2 496 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 RASL12Q9NYN1 266 aa12.63□□□□□ -0.39
SDC1-202ENST00000381150 ZNF629Q9UEG4 869 aaPredicted RBP12.63□□□□□ -0.39
SDC1-202ENST00000381150 CFAP54Q96N23 3096 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms