RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SYT14Q8NB59 555 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 OR6Q1Q8NGQ2 317 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 PELI1Q96FA3 418 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 KCTD7Q96MP8 289 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 MMP27Q9H306 513 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 PLGRKTQ9HBL7 147 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 ASCL3Q9NQ33 180 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 SNTG1Q9NSN8 517 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 GALNT8Q9NY28 637 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 B3GAT1Q9P2W7 334 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 GSTK1Q9Y2Q3 226 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 ALPK2Q86TB3 2170 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 DMXL1Q9Y485 3027 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 NPIPB13A6NJU9 1138 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 NPIPB4C9JG80 1138 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 PSMD9O00233 223 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 CDRT1O95170 752 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 CTLA4P16410 223 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 ZNF17P17021 662 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 FGF9P31371 208 aaPredicted RBP12□□□□□ -0.49
HMGB1-202ENST00000339872 CD96P40200 585 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 SLC3A1Q07837 685 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 GPAT4Q86UL3 456 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 ADPRHL1Q8NDY3 354 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 ADAMTS14Q8WXS8 1223 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 MIB2Q96AX9 1013 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 TXNDC15Q96J42 360 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 DACH2Q96NX9 599 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 INTS14Q96SY0 518 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 PIGQQ9BRB3 760 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 TSPAN10Q9H1Z9 355 aaPredicted RBP12□□□□□ -0.49
HMGB1-202ENST00000339872 TPK1Q9H3S4 243 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 WDR76Q9H967 626 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 FANCFQ9NPI8 374 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 ACOXLQ9NUZ1 547 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 KLHDC2Q9Y2U9 406 aa12□□□□□ -0.49
HMGB1-202ENST00000339872 LRRC3CA6NJW4 275 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 ZNF814B7Z6K7 855 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 PLPP2O43688 288 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 CEACAM1P13688 526 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 SRD5A2P31213 254 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 RPS27P42677 84 aaKnown RBP11.99□□□□□ -0.49
HMGB1-202ENST00000339872 GBX2P52951 348 aaPredicted RBP11.99□□□□□ -0.49
HMGB1-202ENST00000339872 TUBA3EQ6PEY2 450 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 LINC00696Q6ZRV3 163 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 LINC00299Q6ZSB3 139 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 TMPPEQ6ZT21 453 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 VASH2Q86V25 355 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 CDC20BQ86Y33 519 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 WDFY1Q8IWB7 410 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 UEVLDQ8IX04 471 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 OR14L1PQ8NHC6 308 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 SLC39A7Q92504 469 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 ADAD1Q96M93 576 aaKnown RBP11.99□□□□□ -0.49
HMGB1-202ENST00000339872 SIGLEC12Q96PQ1 595 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 COQ7Q99807 217 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 UTP23Q9BRU9 249 aaKnown RBP11.99□□□□□ -0.49
HMGB1-202ENST00000339872 EMC6Q9BV81 110 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 NXF2Q9GZY0 626 aaKnown RBP11.99□□□□□ -0.49
HMGB1-202ENST00000339872 LAMP5Q9UJQ1 280 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 IGLV1-36A0A0B4J1U3 117 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 PRR32B1ATL7 298 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 J3QRK9 145 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 RGS9O75916 674 aaPredicted RBP11.99□□□□□ -0.49
HMGB1-202ENST00000339872 RFPL3SP0C7P2 107 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 P2RY4P51582 365 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 BIDP55957 195 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 SLC35A1P78382 337 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 ETFDHQ16134 617 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 ZNF829Q3KNS6 432 aaPredicted RBP11.99□□□□□ -0.49
HMGB1-202ENST00000339872 OTPQ5XKR4 325 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 FAM205BPQ63HN1 556 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 TMEM225Q6GV28 225 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 DPY19L4Q7Z388 723 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.99□□□□□ -0.49
HMGB1-202ENST00000339872 YRDCQ86U90 279 aaKnown RBP11.99□□□□□ -0.49
HMGB1-202ENST00000339872 BORCS5Q969J3 196 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 KLHL15Q96M94 604 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 KCNK17Q96T54 332 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 HMG20AQ9NP66 347 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 AKIP1Q9NQ31 210 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 ST6GALNAC2Q9UJ37 374 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 TRAPPC4Q9Y296 219 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 MUC6Q6W4X9 2439 aa11.99□□□□□ -0.49
HMGB1-202ENST00000339872 KIAA1549Q9HCM3 1950 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 PINLYPA6NC86 204 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 CLDN25C9JDP6 229 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 NEURL1O76050 574 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 PMS2P2O95744 297 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 IL1AP01583 271 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 LIPCP11150 499 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 KLK2P20151 261 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 CNR1P21554 472 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 CRABP1P29762 137 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 SDC2P34741 201 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 PSMB10P40306 273 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 FMODQ06828 376 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 DMKNQ6E0U4 476 aaPredicted RBP11.98□□□□□ -0.49
HMGB1-202ENST00000339872 TMEM91Q6ZNR0 172 aa11.98□□□□□ -0.49
HMGB1-202ENST00000339872 PLEKHG7Q6ZR37 379 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms