RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 IGHA1P01876 353 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 LIMS3P0CW19 117 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 LIMS4P0CW20 117 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 LHX2P50458 406 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 AGFG1P52594 562 aaKnown RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 PDSS1Q5T2R2 415 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 EEF1A1P5Q5VTE0 462 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 NHLRC1Q6VVB1 395 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 TRILQ7L0X0 811 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 ZNF367Q7RTV3 350 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 ACBD7Q8N6N7 88 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 ZNF511Q8NB15 262 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 ABTB1Q969K4 478 aaPredicted RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 ADGRG7Q96K78 797 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 CNN2Q99439 309 aaKnown RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 ACKR4Q9NPB9 350 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 VSX1Q9NZR4 365 aaPredicted RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 DAPL1A0PJW8 107 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 TFECO14948 347 aaPredicted RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 DNPH1O43598 174 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 TRAF3IP2O43734 574 aaPredicted RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 TRMUO75648 421 aaKnown RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 CENPAP49450 140 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 HCCSP53701 268 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 SPHARQ15513 63 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 ARMCX4Q5H9R4 360 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 LINC01590Q5TEZ4 76 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 OR2G6Q5TZ20 316 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 FAM205BPQ63HN1 556 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 COG8Q96MW5 612 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 SNX18Q96RF0 628 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 MGLLQ99685 303 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 NAA50Q9GZZ1 169 aaKnown RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 TIGARQ9NQ88 270 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 ERVK13-1Q9NX77 482 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 B9D1Q9UPM9 204 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 LSM2Q9Y333 95 aaKnown RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 PCDHGA9Q9Y5G4 932 aaKnown RBP13.12□□□□□ -0.31
CBX3-201ENST00000337620 LIPGQ9Y5X9 500 aa13.12□□□□□ -0.31
CBX3-201ENST00000337620 LOC102725191A0A1B0GVB3 256 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 SLC35F4A4IF30 521 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 NPIPA2E9PIF3 369 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 NPIPA3F8WFD2 350 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 SMAD9O15198 467 aaKnown RBP13.11□□□□□ -0.31
CBX3-201ENST00000337620 SELENOFO60613 162 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 VAMP5O95183 116 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 CAMK2DQ13557 499 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 GGTLC2Q14390 218 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 IGFL3Q6UXB1 125 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 LRRC69Q6ZNQ3 347 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 POMGNT2Q8NAT1 580 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 GATAD2BQ8WXI9 593 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 ROBO4Q8WZ75 1007 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 ZNF845Q96IR2 970 aaPredicted RBP13.11□□□□□ -0.31
CBX3-201ENST00000337620 FOXN4Q96NZ1 517 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 FUNDC2Q9BWH2 189 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 RSL24D1Q9UHA3 163 aaKnown RBP13.11□□□□□ -0.31
CBX3-201ENST00000337620 RAXQ9Y2V3 346 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 FKBP7Q9Y680 259 aa13.11□□□□□ -0.31
CBX3-201ENST00000337620 TMEM129A0AVI4 362 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 TVP23AA6NH52 213 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 ZNF726A6NNF4 738 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 K7ENP7 123 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 GPANK1O95872 356 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 HLA-DQA2P01906 255 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 ADRB1P08588 477 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 CTLA4P16410 223 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 ZNF24P17028 368 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 LIPAP38571 399 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 CD79BP40259 229 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 WNT4P56705 351 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 CLDN17P56750 224 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 CLDN18P56856 261 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 DOC2BQ14184 412 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 ZNF169Q14929 603 aaPredicted RBP13.1□□□□□ -0.31
CBX3-201ENST00000337620 ETFDHQ16134 617 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 CARD17Q5XLA6 110 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 INO80CQ6PI98 192 aaPredicted RBP13.1□□□□□ -0.31
CBX3-201ENST00000337620 KLHL36Q8N4N3 616 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 MEIOBQ8N635 442 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 NEIL3Q8TAT5 605 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 KCNK17Q96T54 332 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 TSPAN10Q9H1Z9 355 aaPredicted RBP13.1□□□□□ -0.31
CBX3-201ENST00000337620 ZDHHC11Q9H8X9 412 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 PCDHGB7Q9Y5F8 929 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 ZNF407Q9C0G0 2248 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 PRRC2CQ9Y520 2896 aaKnown RBP13.1□□□□□ -0.31
CBX3-201ENST00000337620 TRGV5A0A0B4J1U4 118 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 MKRN2OSH3BPM6 223 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 TFP02787 698 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 PDGFAP04085 211 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 ZNF708P17019 499 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 CRABP1P29762 137 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 CLRN1P58418 232 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 FMODQ06828 376 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 SLC17A1Q14916 467 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 CREB3L2Q70SY1 520 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 ZBTB46Q86UZ6 589 aa13.1□□□□□ -0.31
CBX3-201ENST00000337620 ERI1Q8IV48 349 aaKnown RBP13.1□□□□□ -0.31
CBX3-201ENST00000337620 SLC35F2Q8IXU6 374 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms