RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 CCDC168Q8NDH2 2452 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 A0A096LPE4 126 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 ARPC4-TTLL3A0A0A6YYG9 625 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 TRBV4-1A0A0J9YWV2 114 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 A0A1W2PPZ6 126 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 M0R1B8 84 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 ENTPD5O75356 428 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 DNAJC8O75937 253 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-201ENST00000332345 PLAUP00749 431 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 ACADSP16219 412 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 ATP6V1B2P21281 511 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 CD40P25942 277 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 IFNGR2P38484 337 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 GPR4P46093 362 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 CLRN1P58418 232 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 CTXN1P60606 82 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 RPS4XP62701 263 aaKnown RBP12.26□□□□□ -0.45
LIMS1-201ENST00000332345 CHRNB3Q05901 458 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 BNIP1Q12981 228 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 MELKQ14680 651 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 FAM98BQ52LJ0 330 aaKnown RBP12.26□□□□□ -0.45
LIMS1-201ENST00000332345 PHYHD1Q5SRE7 291 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 OR4K5Q8NGD3 323 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 AKAP1Q92667 903 aaKnown RBP eCLIP12.26□□□□□ -0.45
LIMS1-201ENST00000332345 PIGTQ969N2 578 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 CCDC124Q96CT7 223 aaKnown RBP12.26□□□□□ -0.45
LIMS1-201ENST00000332345 SLC7A6OSQ96CW6 309 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-201ENST00000332345 MBD6Q96DN6 1003 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 ZNF837Q96EG3 531 aaPredicted RBP12.26□□□□□ -0.45
LIMS1-201ENST00000332345 CLPTM1LQ96KA5 538 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 ALPK1Q96QP1 1244 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 AURKCQ9UQB9 309 aa12.26□□□□□ -0.45
LIMS1-201ENST00000332345 MYO9AB2RTY4 2548 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 TRAV27A0A087WT01 109 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 TCRBV5S2A0A599 114 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 SH3PXD2BA1X283 911 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 CDC42EP2O14613 210 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 ABCD4O14678 606 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 HS3ST1O14792 307 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 TRMUO75648 421 aaKnown RBP12.25□□□□□ -0.45
LIMS1-201ENST00000332345 ATE1O95260 518 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 QDPRP09417 244 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 PGA4P0DJD7 388 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 PGA3P0DJD8 388 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 NR2C1P13056 603 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 RRM2P31350 389 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 RPL27P61353 136 aaKnown RBP12.25□□□□□ -0.45
LIMS1-201ENST00000332345 ZNF672Q499Z4 452 aaPredicted RBP12.25□□□□□ -0.45
LIMS1-201ENST00000332345 ARMC4Q5T2S8 1044 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 LRFN4Q6PJG9 635 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 ZNF627Q7L945 461 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 MEX3DQ86XN8 651 aaKnown RBP12.25□□□□□ -0.45
LIMS1-201ENST00000332345 WDFY1Q8IWB7 410 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 ZNF611Q8N823 705 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 FAM169BQ8N8A8 192 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 ASB10Q8WXI3 467 aa12.25□□□□□ -0.45
LIMS1-201ENST00000332345 FAM46AQ96IP4 442 aaKnown RBP12.25□□□□□ -0.45
LIMS1-201ENST00000332345 MRPL13Q9BYD1 178 aaKnown RBP12.25□□□□□ -0.45
LIMS1-201ENST00000332345 ACOT8O14734 319 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 DHHO43323 396 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 PTP4A3O75365 173 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 HOXB6P17509 224 aaKnown RBP12.24□□□□□ -0.45
LIMS1-201ENST00000332345 CD53P19397 219 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 RPL4P36578 427 aaKnown RBP12.24□□□□□ -0.45
LIMS1-201ENST00000332345 CAPZA2P47755 286 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 OMPP47874 163 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 ZNF84P51523 738 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 HMGA2P52926 109 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 ART1P52961 327 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 SEC23BQ15437 767 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 HIST3H3Q16695 136 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 C3orf36Q3SXR2 165 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 FAM205BPQ63HN1 556 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 PGM2L1Q6PCE3 622 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 SLC22A25Q6T423 547 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 ZNF813Q6ZN06 617 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 LINC00471Q8N535 108 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 SYT14Q8NB59 555 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 OR13C2Q8NGS9 318 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 FNDC8Q8TC99 324 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 FBXW5Q969U6 566 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 MCHR2Q969V1 340 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 RBP7Q96R05 134 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 CCL19Q99731 98 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 FOXB1Q99853 325 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 FOXC2Q99958 501 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 KCNS3Q9BQ31 491 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 FUZQ9BT04 418 aa12.24□□□□□ -0.45
LIMS1-201ENST00000332345 BEX4Q9NWD9 120 aaPredicted RBP12.24□□□□□ -0.45
LIMS1-201ENST00000332345 CISD1Q9NZ45 108 aaKnown RBP12.24□□□□□ -0.45
LIMS1-201ENST00000332345 ZNF346Q9UL40 294 aaKnown RBP12.24□□□□□ -0.45
LIMS1-201ENST00000332345 UNC119BA6NIH7 251 aa12.23□□□□□ -0.45
LIMS1-201ENST00000332345 A6NIZ1 184 aa12.23□□□□□ -0.45
LIMS1-201ENST00000332345 AQP12BA6NM10 295 aa12.23□□□□□ -0.45
LIMS1-201ENST00000332345 TNFRSF11BO00300 401 aa12.23□□□□□ -0.45
LIMS1-201ENST00000332345 GSC2O15499 205 aa12.23□□□□□ -0.45
LIMS1-201ENST00000332345 MGRN1O60291 552 aa12.23□□□□□ -0.45
LIMS1-201ENST00000332345 OR10H3O60404 316 aa12.23□□□□□ -0.45
LIMS1-201ENST00000332345 NDUFB2O95178 105 aa12.23□□□□□ -0.45
LIMS1-201ENST00000332345 FARS2O95363 451 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms