RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CGGBP1Q9UFW8 167 aaPredicted RBP15.06■□□□□ 0
VPS54-201ENST00000272322 ELF5Q9UKW6 265 aaPredicted RBP15.06■□□□□ 0
VPS54-201ENST00000272322 ICAM5Q9UMF0 924 aa15.06■□□□□ 0
VPS54-201ENST00000272322 ADAM8P78325 824 aa15.05■□□□□ 0
VPS54-201ENST00000272322 ALKBH1Q13686 389 aaKnown RBP15.05■□□□□ 0
VPS54-201ENST00000272322 TRAM1Q15629 374 aa15.05■□□□□ 0
VPS54-201ENST00000272322 OR4D10Q8NGI6 311 aa15.05■□□□□ 0
VPS54-201ENST00000272322 ZC3HAV1LQ96H79 300 aaKnown RBP15.05■□□□□ 0
VPS54-201ENST00000272322 UBL7Q96S82 380 aaPredicted RBP15.05■□□□□ 0
VPS54-201ENST00000272322 JAM3Q9BX67 310 aa15.05■□□□□ 0
VPS54-201ENST00000272322 C20orf85Q9H1P6 137 aa15.05■□□□□ 0
VPS54-201ENST00000272322 TLCD2A6NGC4 264 aa15.05■□□□□ -0
VPS54-201ENST00000272322 CCDC85CA6NKD9 419 aa15.05■□□□□ -0
VPS54-201ENST00000272322 ZNF354AO60765 605 aaPredicted RBP15.05■□□□□ -0
VPS54-201ENST00000272322 ITGA10O75578 1167 aa15.05■□□□□ -0
VPS54-201ENST00000272322 RENP00797 406 aa15.05■□□□□ -0
VPS54-201ENST00000272322 NME1P15531 152 aaKnown RBP15.05■□□□□ -0
VPS54-201ENST00000272322 ZNF24P17028 368 aa15.05■□□□□ -0
VPS54-201ENST00000272322 DNASE1P24855 282 aa15.05■□□□□ -0
VPS54-201ENST00000272322 FOXK1P85037 733 aa15.05■□□□□ -0
VPS54-201ENST00000272322 TMPRSS9Q7Z410 1059 aa15.05■□□□□ -0
VPS54-201ENST00000272322 ARL5BQ96KC2 179 aa15.05■□□□□ -0
VPS54-201ENST00000272322 GHITMQ9H3K2 345 aa15.05■□□□□ -0
VPS54-201ENST00000272322 HRASLSQ9HDD0 168 aa15.05■□□□□ -0
VPS54-201ENST00000272322 FGF21Q9NSA1 209 aa15.05■□□□□ -0
VPS54-201ENST00000272322 FBXL3Q9UKT7 428 aa15.05■□□□□ -0
VPS54-201ENST00000272322 TRAV18A0A075B6X5 111 aa15.05■□□□□ -0
VPS54-201ENST00000272322 SCO1O75880 301 aa15.05■□□□□ -0
VPS54-201ENST00000272322 PNPP00491 289 aa15.05■□□□□ -0
VPS54-201ENST00000272322 DCNP07585 359 aaKnown RBP15.05■□□□□ -0
VPS54-201ENST00000272322 CTLA4P16410 223 aa15.05■□□□□ -0
VPS54-201ENST00000272322 FAM122BQ7Z309 247 aa15.05■□□□□ -0
VPS54-201ENST00000272322 SLITRK4Q8IW52 837 aa15.05■□□□□ -0
VPS54-201ENST00000272322 SYS1Q8N2H4 156 aa15.05■□□□□ -0
VPS54-201ENST00000272322 OR2G2Q8NGZ5 317 aa15.05■□□□□ -0
VPS54-201ENST00000272322 ZDHHC12Q96GR4 267 aa15.05■□□□□ -0
VPS54-201ENST00000272322 INTS14Q96SY0 518 aa15.05■□□□□ -0
VPS54-201ENST00000272322 C1QTNF6Q9BXI9 259 aa15.05■□□□□ -0
VPS54-201ENST00000272322 SLITRK2Q9H156 845 aa15.05■□□□□ -0
VPS54-201ENST00000272322 MED11Q9P086 117 aa15.05■□□□□ -0
VPS54-201ENST00000272322 B9D1Q9UPM9 204 aa15.05■□□□□ -0
VPS54-201ENST00000272322 PCDHGA9Q9Y5G4 932 aaKnown RBP15.05■□□□□ -0
VPS54-201ENST00000272322 MTCH2Q9Y6C9 303 aa15.05■□□□□ -0
VPS54-201ENST00000272322 ARPC3O15145 178 aa15.04■□□□□ -0
VPS54-201ENST00000272322 ABCD3P28288 659 aa15.04■□□□□ -0
VPS54-201ENST00000272322 PPICP45877 212 aa15.04■□□□□ -0
VPS54-201ENST00000272322 PSMD4P55036 377 aaKnown RBP15.04■□□□□ -0
VPS54-201ENST00000272322 FBXW4P57775 412 aa15.04■□□□□ -0
VPS54-201ENST00000272322 TMEM205Q6UW68 189 aa15.04■□□□□ -0
VPS54-201ENST00000272322 SLC35F3Q8IY50 421 aa15.04■□□□□ -0
VPS54-201ENST00000272322 ZNF417Q8TAU3 575 aa15.04■□□□□ -0
VPS54-201ENST00000272322 ZNF587Q96SQ5 575 aaPredicted RBP15.04■□□□□ -0
VPS54-201ENST00000272322 DDOQ99489 341 aa15.04■□□□□ -0
VPS54-201ENST00000272322 ZNF304Q9HCX3 659 aa15.04■□□□□ -0
VPS54-201ENST00000272322 ABRACLQ9P1F3 81 aa15.04■□□□□ -0
VPS54-201ENST00000272322 CIB4A0PJX0 185 aa15.04■□□□□ -0
VPS54-201ENST00000272322 SUSD5O60279 629 aa15.04■□□□□ -0
VPS54-201ENST00000272322 UPK3AO75631 287 aa15.04■□□□□ -0
VPS54-201ENST00000272322 TRAPPC2P0DI81 140 aa15.04■□□□□ -0
VPS54-201ENST00000272322 TRAPPC2BP0DI82 140 aa15.04■□□□□ -0
VPS54-201ENST00000272322 ANXA3P12429 323 aa15.04■□□□□ -0
VPS54-201ENST00000272322 FBLP22087 321 aaKnown RBP15.04■□□□□ -0
VPS54-201ENST00000272322 CCR5P51681 352 aa15.04■□□□□ -0
VPS54-201ENST00000272322 CCR9P51686 369 aa15.04■□□□□ -0
VPS54-201ENST00000272322 AP2S1P53680 142 aaPredicted RBP15.04■□□□□ -0
VPS54-201ENST00000272322 PITPNAQ00169 270 aa15.04■□□□□ -0
VPS54-201ENST00000272322 SPOCK1Q08629 439 aa15.04■□□□□ -0
VPS54-201ENST00000272322 GSG1Q2KHT4 349 aa15.04■□□□□ -0
VPS54-201ENST00000272322 LINC00303Q3SY05 128 aa15.04■□□□□ -0
VPS54-201ENST00000272322 CHCHD2P9Q5T1J5 151 aaPredicted RBP15.04■□□□□ -0
VPS54-201ENST00000272322 SDR16C5Q8N3Y7 309 aa15.04■□□□□ -0
VPS54-201ENST00000272322 FCAMRQ8WWV6 532 aa15.04■□□□□ -0
VPS54-201ENST00000272322 VN1R1Q9GZP7 353 aa15.04■□□□□ -0
VPS54-201ENST00000272322 MRPL39Q9NYK5 338 aaKnown RBP15.04■□□□□ -0
VPS54-201ENST00000272322 COPS7AQ9UBW8 275 aa15.04■□□□□ -0
VPS54-201ENST00000272322 CAMK2AQ9UQM7 478 aa15.04■□□□□ -0
VPS54-201ENST00000272322 A0A1W2PQ72 361 aa15.04■□□□□ -0
VPS54-201ENST00000272322 GPR171O14626 319 aa15.04■□□□□ -0
VPS54-201ENST00000272322 DDAH2O95865 285 aa15.04■□□□□ -0
VPS54-201ENST00000272322 MMP15P51511 669 aa15.04■□□□□ -0
VPS54-201ENST00000272322 GFOD2Q3B7J2 385 aa15.04■□□□□ -0
VPS54-201ENST00000272322 Q499Y3 187 aa15.04■□□□□ -0
VPS54-201ENST00000272322 WDR38Q5JTN6 314 aa15.04■□□□□ -0
VPS54-201ENST00000272322 PWWP2BQ6NUJ5 590 aa15.04■□□□□ -0
VPS54-201ENST00000272322 FGD2Q7Z6J4 655 aa15.04■□□□□ -0
VPS54-201ENST00000272322 MAP6Q96JE9 813 aa15.04■□□□□ -0
VPS54-201ENST00000272322 SLA2Q9H6Q3 261 aa15.04■□□□□ -0
VPS54-201ENST00000272322 TAS2R5Q9NYW4 299 aa15.04■□□□□ -0
VPS54-201ENST00000272322 HIF3AQ9Y2N7 669 aa15.04■□□□□ -0
VPS54-201ENST00000272322 COA3Q9Y2R0 106 aaPredicted RBP15.04■□□□□ -0
VPS54-201ENST00000272322 TRAV1-2A0A0B4J238 106 aa15.03■□□□□ -0
VPS54-201ENST00000272322 AIPO00170 330 aa15.03■□□□□ -0
VPS54-201ENST00000272322 TACSTD2P09758 323 aa15.03■□□□□ -0
VPS54-201ENST00000272322 PNMTP11086 282 aa15.03■□□□□ -0
VPS54-201ENST00000272322 GP1BBP13224 206 aa15.03■□□□□ -0
VPS54-201ENST00000272322 FASLGP48023 281 aa15.03■□□□□ -0
VPS54-201ENST00000272322 SERTAD2Q14140 314 aa15.03■□□□□ -0
VPS54-201ENST00000272322 PCGF3Q3KNV8 242 aa15.03■□□□□ -0
VPS54-201ENST00000272322 B3GNTL1Q67FW5 361 aaPredicted RBP15.03■□□□□ -0
VPS54-201ENST00000272322 NHLRC1Q6VVB1 395 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms