RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ZNF208O43345 1280 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 AKAP8O43823 692 aaKnown RBP14.78□□□□□ -0.04
USP4-201ENST00000265560 NEURL1O76050 574 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 CDRT1O95170 752 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 CELA3AP09093 270 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 BIDP55957 195 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 HSF1Q00613 529 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 ROR2Q01974 943 aaKnown RBP14.78□□□□□ -0.04
USP4-201ENST00000265560 ODF4Q2M2E3 257 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 MCFD2Q8NI22 146 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 HSD17B8Q92506 261 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 B3GAT1Q9P2W7 334 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 A0A1B0GVG6 124 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 CDRT15L2A8MXV6 281 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 TNFSF11O14788 317 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 NCR1O76036 304 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 LIMK1P53667 647 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 TPBGQ13641 420 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 DGUOKQ16854 277 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 USP43Q70EL4 1123 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 ZNF519Q8TB69 540 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 THEM6Q8WUY1 208 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 KIAA1143Q96AT1 154 aaPredicted RBP14.78□□□□□ -0.04
USP4-201ENST00000265560 HAO2Q9NYQ3 351 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 COA3Q9Y2R0 106 aaPredicted RBP14.78□□□□□ -0.04
USP4-201ENST00000265560 CSAG2Q9Y5P2 127 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 CHD8Q9HCK8 2581 aa14.78□□□□□ -0.04
USP4-201ENST00000265560 HTR3EA5X5Y0 456 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 FAM166BA8MTA8 275 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 TM4SF5O14894 197 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 TXNDC12O95881 172 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 OR8G3PP0DMU2 310 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 GDF1P27539 372 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 SDC2P34741 201 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 DSCR4P56555 118 aaPredicted RBP14.77□□□□□ -0.04
USP4-201ENST00000265560 SLC25A53Q5H9E4 307 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 SLC43A2Q8N370 569 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 OR2T4Q8NH00 348 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 OR52N1Q8NH53 320 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 ORAI1Q96D31 301 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 PPIL3Q9H2H8 161 aaKnown RBP14.77□□□□□ -0.04
USP4-201ENST00000265560 GALNT8Q9NY28 637 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 B9D1Q9UPM9 204 aa14.77□□□□□ -0.04
USP4-201ENST00000265560 DCDC2BA2VCK2 349 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 LRRC3CA6NJW4 275 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 APEHP13798 732 aaKnown RBP14.77□□□□□ -0.05
USP4-201ENST00000265560 ENPP1P22413 925 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 OR1C1Q15619 314 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 ARMC4Q5T2S8 1044 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 GPR139Q6DWJ6 353 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 TUBA3EQ6PEY2 450 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 ADAD1Q96M93 576 aaKnown RBP14.77□□□□□ -0.05
USP4-201ENST00000265560 PDCD1LG2Q9BQ51 273 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 CDADC1Q9BWV3 514 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 OCEL1Q9H607 264 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 TEKT2Q9UIF3 430 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 KCNG2Q9UJ96 466 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 SHISA3A0PJX4 238 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 SLC22A23A1A5C7 686 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 ETV2O00321 342 aaPredicted RBP14.77□□□□□ -0.05
USP4-201ENST00000265560 CBR3O75828 277 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 MT-ND5P03915 603 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 ARMC10Q8N2F6 343 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 GTPBP8Q8N3Z3 284 aaPredicted RBP14.77□□□□□ -0.05
USP4-201ENST00000265560 THAP4Q8WY91 577 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 PELI1Q96FA3 418 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 BARHL1Q9BZE3 327 aa14.77□□□□□ -0.05
USP4-201ENST00000265560 ZZEF1O43149 2961 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 NCOA6Q14686 2063 aaPredicted RBP14.76□□□□□ -0.05
USP4-201ENST00000265560 SLC30A4O14863 429 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 CCL11P51671 97 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.76□□□□□ -0.05
USP4-201ENST00000265560 EEF1A1P5Q5VTE0 462 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 VASH1Q7L8A9 365 aaPredicted RBP14.76□□□□□ -0.05
USP4-201ENST00000265560 GALNT16Q8N428 558 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 UTP23Q9BRU9 249 aaKnown RBP14.76□□□□□ -0.05
USP4-201ENST00000265560 ALKBH4Q9NXW9 302 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 DOK2O60496 412 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 OR2T7P0C7T2 308 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 SELENBP1Q13228 472 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 TIMM50Q3ZCQ8 353 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 LCN1P1Q5VSP4 162 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 SYT9Q86SS6 491 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 FAM83FQ8NEG4 500 aaPredicted RBP14.76□□□□□ -0.05
USP4-201ENST00000265560 OR2T27Q8NH04 317 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 POTEKPQ9BYX7 375 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 IKZF2Q9UKS7 526 aa14.76□□□□□ -0.05
USP4-201ENST00000265560 A0A0J9YW62 118 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 CTDSP2O14595 271 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 SNX4O95219 450 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 SPARCP09486 303 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 EIF1P41567 113 aaKnown RBP14.75□□□□□ -0.05
USP4-201ENST00000265560 AIMP2Q13155 320 aaKnown RBP14.75□□□□□ -0.05
USP4-201ENST00000265560 MFAP5Q13361 173 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 CORO6Q6QEF8 472 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 GALNTL5Q7Z4T8 443 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 TIGD4Q8IY51 512 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 ZBTB8AQ96BR9 441 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 TRIM36Q9NQ86 728 aa14.75□□□□□ -0.05
USP4-201ENST00000265560 ZNF593O00488 134 aaPredicted RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms