RNA–Protein interactions for RNA: ENST00000221922.10

CCDC9-201, Transcript of coiled-coil domain containing 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC9, Length 2,093 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-201ENST00000221922 ARPC4P59998 168 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 ZP1P60852 638 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 NSDHLQ15738 373 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 ELFN2Q5R3F8 820 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 ARHGAP40Q5TG30 622 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 SLC6A19Q695T7 634 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 HIST3H2AQ7L7L0 130 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 SLC16A9Q7RTY1 509 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 PRR22Q8IZ63 422 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 HIST1H2ACQ93077 130 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 MARVELD3Q96A59 401 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 CCDC74AQ96AQ1 378 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 RADILQ96JH8 1075 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 LPAR4Q99677 370 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 MRI1Q9BV20 369 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 FKRPQ9H9S5 495 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 FGF21Q9NSA1 209 aa20.12■□□□□ 0.81
CCDC9-201ENST00000221922 ASXL3Q9C0F0 2248 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 NAP1L6A6NFF2 107 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 IDSB3KWA1 339 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 SULT1B1O43704 296 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 SSNA1O43805 119 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 GMDSO60547 372 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 EIF4E2O60573 245 aaKnown RBP20.11■□□□□ 0.81
CCDC9-201ENST00000221922 TGM6O95932 706 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 HPXP02790 462 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 ZNF117Q03924 483 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 LGALSLQ3ZCW2 172 aaPredicted RBP20.11■□□□□ 0.81
CCDC9-201ENST00000221922 MAMSTRQ6ZN01 415 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 SLC29A4Q7RTT9 530 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 KCTD20Q7Z5Y7 419 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 EXD3Q8N9H8 876 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 ORAI1Q96D31 301 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 NUDT22Q9BRQ3 303 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 SLC25A18Q9H1K4 315 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 GRHPRQ9UBQ7 328 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 RCE1Q9Y256 329 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 V9GY05 133 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 CCDC163A0A0D9SF12 145 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 HCRTR2O43614 444 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 PRAF2O60831 178 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 CRYZL1O95825 349 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 TACSTD2P09758 323 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 PSMB1P20618 241 aaKnown RBP20.11■□□□□ 0.81
CCDC9-201ENST00000221922 HOXA6P31267 233 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 RPL18Q07020 188 aaKnown RBP20.11■□□□□ 0.81
CCDC9-201ENST00000221922 VWA2Q5GFL6 755 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 LYSMD4Q5XG99 296 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 GPR139Q6DWJ6 353 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 C9orf40Q8IXQ3 194 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 ELMOD2Q8IZ81 293 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 OR52I2Q8NH67 350 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 DPYSL5Q9BPU6 564 aa20.11■□□□□ 0.81
CCDC9-201ENST00000221922 UNC13CQ8NB66 2214 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 OR6C76A6NM76 312 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 ALG1L2C9J202 215 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 CDC40O60508 579 aaKnown RBP eCLIP20.1■□□□□ 0.81
CCDC9-201ENST00000221922 TSPAN2O60636 221 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 PNLIPP16233 465 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 DNASE1P24855 282 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 NR0B1P51843 470 aaKnown RBP20.1■□□□□ 0.81
CCDC9-201ENST00000221922 AP3S2P59780 193 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 LTBQ06643 244 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 PLCXD2Q0VAA5 305 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 FCRLAQ7L513 359 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 KTI12Q96EK9 354 aaPredicted RBP20.1■□□□□ 0.81
CCDC9-201ENST00000221922 ZNF436Q9C0F3 470 aaPredicted RBP20.1■□□□□ 0.81
CCDC9-201ENST00000221922 WWTR1Q9GZV5 400 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 LIN7BQ9HAP6 207 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 KLHL9Q9P2J3 617 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 RP1P56715 2156 aa20.1■□□□□ 0.81
CCDC9-201ENST00000221922 KRT33AO76009 404 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 CALCBP10092 127 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 CXCR1P25024 350 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 EPHA8P29322 1005 aaPredicted RBP20.09■□□□□ 0.81
CCDC9-201ENST00000221922 PTH2RP49190 550 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 TMEM255AQ5JRV8 349 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 SFRP4Q6FHJ7 346 aaPredicted RBP20.09■□□□□ 0.81
CCDC9-201ENST00000221922 KANSL1Q7Z3B3 1105 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 FAM220AQ7Z4H9 259 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 CCDC28AQ8IWP9 274 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 OR1N1Q8NGS0 311 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 OR2T4Q8NH00 348 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 MAP6Q96JE9 813 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 TBL1XR1Q9BZK7 514 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 ARID1BQ8NFD5 2236 aaPredicted RBP20.09■□□□□ 0.81
CCDC9-201ENST00000221922 RAB40ALP0C0E4 278 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 PGCP20142 388 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 C1orf189Q5VU69 101 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 PWWP2BQ6NUJ5 590 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 TMEM71Q6P5X7 295 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 Q7L0L9 218 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 ZNF433Q8N7K0 673 aaPredicted RBP20.09■□□□□ 0.81
CCDC9-201ENST00000221922 RAB40AQ8WXH6 277 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 DACT3Q96B18 629 aaPredicted RBP20.09■□□□□ 0.81
CCDC9-201ENST00000221922 NXPE2Q96DL1 559 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 DUSP23Q9BVJ7 150 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 VN1R1Q9GZP7 353 aa20.09■□□□□ 0.81
CCDC9-201ENST00000221922 MRPL15Q9P015 296 aaKnown RBP20.09■□□□□ 0.81
CCDC9-201ENST00000221922 SRPK3Q9UPE1 567 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms