RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TRIM77I1YAP6 450 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 SLC22A3O75751 556 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 RAB36O95755 333 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 ZCCHC18P0CG32 403 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 EPHA1P21709 976 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 HILS1P60008 231 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 RAB1AP62820 205 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 FXNQ16595 210 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 HHATQ5VTY9 493 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 C5orf46Q6UWT4 87 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 C1orf229Q6ZS94 237 aaPredicted RBP16.63■□□□□ 0.25
CLN3-262ENST00000637699 WDFY1Q8IWB7 410 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 RNF217Q8TC41 542 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 MAL2Q969L2 176 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 LRR1Q96L50 414 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 C12orf10Q9HB07 376 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 B3GAT2Q9NPZ5 323 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 MED29Q9NX70 200 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 THUMPD1Q9NXG2 353 aaKnown RBP16.63■□□□□ 0.25
CLN3-262ENST00000637699 ZNF224Q9NZL3 707 aa16.63■□□□□ 0.25
CLN3-262ENST00000637699 LOC105371242A0A075B767 164 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 TRAV20A0A0B4J274 112 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 KCNAB3O43448 404 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 PNPP00491 289 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 AVPP01185 164 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 HTR2AP28223 471 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 RPS23P62266 143 aaKnown RBP16.62■□□□□ 0.25
CLN3-262ENST00000637699 MYBPC1Q00872 1141 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 CAMK2DQ13557 499 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 RAB39AQ14964 217 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 GLIPR1L2Q4G1C9 344 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 ALG10BQ5I7T1 473 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 C6orf10Q5SRN2 563 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 NXNQ6DKJ4 435 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 OR6N1Q8NGY5 312 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 SLC35B4Q969S0 331 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 ITCHQ96J02 903 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 ZNF416Q9BWM5 594 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 ULBP2Q9BZM5 246 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 RMND5AQ9H871 391 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 KLHL14Q9P2G3 628 aa16.62■□□□□ 0.25
CLN3-262ENST00000637699 A0A087WUJ7 227 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 ZNF726A6NNF4 738 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 CDC14BO60729 498 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 RP2O75695 350 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 PATE4P0C8F1 98 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 MAGEB1P43366 347 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 MAGOHP61326 146 aaKnown RBP16.61■□□□□ 0.25
CLN3-262ENST00000637699 MRPS11P82912 194 aaKnown RBP16.61■□□□□ 0.25
CLN3-262ENST00000637699 PDCD4Q53EL6 469 aaKnown RBP16.61■□□□□ 0.25
CLN3-262ENST00000637699 USP43Q70EL4 1123 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 ZNF627Q7L945 461 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 LSMEM1Q8N8F7 131 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 ADPRHL1Q8NDY3 354 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 BBS10Q8TAM1 723 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 TLCD1Q96CP7 247 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 FOXB1Q99853 325 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 RBM4Q9BWF3 364 aaKnown RBP16.61■□□□□ 0.25
CLN3-262ENST00000637699 RSPO3Q9BXY4 272 aaPredicted RBP16.61■□□□□ 0.25
CLN3-262ENST00000637699 TMBIM4Q9HC24 238 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 BCL2L10Q9HD36 194 aa16.61■□□□□ 0.25
CLN3-262ENST00000637699 PKD1L1Q8TDX9 2849 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 C5orf58C9J3I9 102 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 HDAC3O15379 428 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 ERLIN1O75477 346 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 SERPINI2O75830 405 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 KITP10721 976 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 IDO1P14902 403 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 ANPEPP15144 967 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 LSP1P33241 339 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 MVKQ03426 396 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 PMS2P3Q13401 168 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 RGNQ15493 299 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 NKPD1Q17RQ9 610 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 AVPI1Q5T686 147 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 ACSM5Q6NUN0 579 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 SNX32Q86XE0 403 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 MIER2Q8N344 545 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 DNAJA4Q8WW22 397 aaPredicted RBP16.6■□□□□ 0.25
CLN3-262ENST00000637699 SLC41A3Q96GZ6 507 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 JMJD8Q96S16 334 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 ASPNQ9BXN1 380 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 DENND2DQ9H6A0 471 aaPredicted RBP16.6■□□□□ 0.25
CLN3-262ENST00000637699 ZNF385DQ9H6B1 395 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 A4GALTQ9NPC4 353 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 G6PC2Q9NQR9 355 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 TAAR3PQ9P1P4 343 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 SLC7A8Q9UHI5 535 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 ZNF346Q9UL40 294 aaKnown RBP16.6■□□□□ 0.25
CLN3-262ENST00000637699 CORINQ9Y5Q5 1042 aa16.6■□□□□ 0.25
CLN3-262ENST00000637699 TRPC5OSA6NMA1 111 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 SNNO75324 88 aaPredicted RBP16.59■□□□□ 0.25
CLN3-262ENST00000637699 UBL3O95164 117 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 MPZL1O95297 269 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 CLPTM1O96005 669 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 ARFIP2P53365 341 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 CCL8P80075 99 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 ULK3Q6PHR2 472 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 NHLRC1Q6VVB1 395 aa16.59■□□□□ 0.25
CLN3-262ENST00000637699 COMTD1Q86VU5 262 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms