RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 NPIPB13A6NJU9 1138 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 NPIPB4C9JG80 1138 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 ZNF587BE7ETH6 402 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 PTP4A3O75365 173 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 RAD51DO75771 328 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 CIB2O75838 187 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 BCL10O95999 233 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 CST1P01037 141 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 THBDP07204 575 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 ZNF26P17031 533 aaPredicted RBP14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 PRPS1P60891 318 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 PPP1R8Q12972 351 aaKnown RBP14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 MELKQ14680 651 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 DAZAP2Q15038 168 aaPredicted RBP14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 ACKR1Q16570 336 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 PHYHD1Q5SRE7 291 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 C9orf135Q5VTT2 229 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 C20orf196Q8IYI0 205 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 GPR137CQ8N3F9 429 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 ZC3HAV1LQ96H79 300 aaKnown RBP14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 RSRC1Q96IZ7 334 aaKnown RBP14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 USB1Q9BQ65 265 aaKnown RBP14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 YY1AP1Q9H869 796 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 SIGLEC7Q9Y286 467 aa14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 SAMHD1Q9Y3Z3 626 aaKnown RBP14.56□□□□□ -0.08
CCDC28A-202ENST00000611852 DCHS2Q6V1P9 2916 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 CIB4A0PJX0 185 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 RPL36A-HNRNPH2H7BZ11 118 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 IFNGR2P38484 337 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 ROR2Q01974 943 aaKnown RBP14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 TGFBR3Q03167 851 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 CCNIQ14094 377 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 GABRA6Q16445 453 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 C1orf94Q6P1W5 598 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 PGBD2Q6P3X8 592 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 IGFN1Q86VF2 1251 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 LINC00471Q8N535 108 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 ASB10Q8WXI3 467 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 SLC25A44Q96H78 314 aaPredicted RBP14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 MUS81Q96NY9 551 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 TXNIPQ9H3M7 391 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 ZNF226Q9NYT6 803 aa14.55□□□□□ -0.08
CCDC28A-202ENST00000611852 UNC119BA6NIH7 251 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 OR5H1A6NKK0 313 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 A6NNC1 897 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 MCIDASD6RGH6 385 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 M0R3G1 203 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 CASKO14936 926 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 CCNB2O95067 398 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 FPR3P25089 353 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 SSTR2P30874 369 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 DAP3P51398 398 aaKnown RBP14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 CTXN1P60606 82 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 TLE4Q04727 773 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 TAB1Q15750 504 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 MICAQ29983 383 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 ARMC4Q5T2S8 1044 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 OR7E24Q6IFN5 339 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 ZNF770Q6IQ21 691 aaPredicted RBP14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 HMBOX1Q6NT76 420 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 C1orf162Q8NEQ5 155 aaPredicted RBP14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 OR9Q2Q8NGE9 314 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 OR6N1Q8NGY5 312 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 HSD17B8Q92506 261 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 ZNF566Q969W8 418 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 ZNF837Q96EG3 531 aaPredicted RBP14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 CRLF2Q9HC73 371 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 GPR35Q9HC97 309 aa14.54□□□□□ -0.08
CCDC28A-202ENST00000611852 CACNA1DQ01668 2161 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 FAM221AA4D161 298 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 NDUFB2O95178 105 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 IGHMP01871 453 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 PGA4P0DJD7 388 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 PGA3P0DJD8 388 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 CDH2P19022 906 aaPredicted RBP14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 CRYGSP22914 178 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 GSSP48637 474 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 CSNK1A1P48729 337 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 IST1P53990 364 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 FXYD6P3P58550 94 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 ELF3P78545 371 aaPredicted RBP14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 RUNX1T1Q06455 604 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 GK3PQ14409 553 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 TAF11Q15544 211 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 STK11Q15831 433 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 TIMM23BQ5SRD1 257 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 HDDC2Q7Z4H3 204 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 P2RY8Q86VZ1 359 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 GNPDA2Q8TDQ7 276 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 TMEM54Q969K7 222 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 DUS3LQ96G46 650 aaKnown RBP14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 BOD1Q96IK1 185 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 MRPL13Q9BYD1 178 aaKnown RBP14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 ZNF346Q9UL40 294 aaKnown RBP14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 ABCA4P78363 2273 aa14.53□□□□□ -0.08
CCDC28A-202ENST00000611852 GNGT2O14610 69 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 CTAG2O75638 210 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 GASTP01350 101 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 IGHG1P01857 330 aa14.52□□□□□ -0.08
CCDC28A-202ENST00000611852 CD14P08571 375 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms