RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 FUZQ9BT04 418 aa13.33□□□□□ -0.28
LIG1-219ENST00000600055 NELFAQ9H3P2 528 aa13.33□□□□□ -0.28
LIG1-219ENST00000600055 MUC13Q9H3R2 512 aa13.33□□□□□ -0.28
LIG1-219ENST00000600055 IL1RAPQ9NPH3 570 aa13.33□□□□□ -0.28
LIG1-219ENST00000600055 INIPQ9NRY2 104 aa13.33□□□□□ -0.28
LIG1-219ENST00000600055 ST6GALNAC2Q9UJ37 374 aa13.33□□□□□ -0.28
LIG1-219ENST00000600055 ITGB1BP2Q9UKP3 347 aa13.33□□□□□ -0.28
LIG1-219ENST00000600055 HIF3AQ9Y2N7 669 aa13.33□□□□□ -0.28
LIG1-219ENST00000600055 PRR14LQ5THK1 2151 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 HRNRQ86YZ3 2850 aaPredicted RBP13.32□□□□□ -0.28
LIG1-219ENST00000600055 A0A1W2PRG6 482 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 ACOT8O14734 319 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 SEC14L2O76054 403 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 BCL10O95999 233 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 CSNK1A1P48729 337 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 NR1H2P55055 460 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 TUBA1BP68363 451 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 TUBA4AP68366 448 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 BSPH1Q075Z2 132 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 DNAL1Q4LDG9 190 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 MTX3Q5HYI7 312 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 PGM2L1Q6PCE3 622 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 ZNF704Q6ZNC4 412 aaPredicted RBP13.32□□□□□ -0.28
LIG1-219ENST00000600055 TUBA1AQ71U36 451 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 RRM2BQ7LG56 351 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 C17orf78Q8N4C9 275 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 TMEM54Q969K7 222 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 ASB9Q96DX5 294 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 FAM46AQ96IP4 442 aaKnown RBP13.32□□□□□ -0.28
LIG1-219ENST00000600055 LRR1Q96L50 414 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 ADAD1Q96M93 576 aaKnown RBP13.32□□□□□ -0.28
LIG1-219ENST00000600055 BTBD10Q9BSF8 475 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 TMEM204Q9BSN7 226 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 UBTD1Q9HAC8 227 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 NGBQ9NPG2 151 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 TACC2O95359 2948 aa13.32□□□□□ -0.28
LIG1-219ENST00000600055 HTR3EA5X5Y0 456 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 M0R1B8 84 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 GADD45GO95257 159 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 CD3EP07766 207 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 HOXC12P31275 282 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 RRM2P31350 389 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 OMPP47874 163 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 IST1P53990 364 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 RPS4XP62701 263 aaKnown RBP13.31□□□□□ -0.28
LIG1-219ENST00000600055 TOP3AQ13472 1001 aaPredicted RBP13.31□□□□□ -0.28
LIG1-219ENST00000600055 ACKR1Q16570 336 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 ALG10Q5BKT4 473 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 ANKRD16Q6P6B7 361 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 PAMR1Q6UXH9 720 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 TMPRSS11FQ6ZWK6 438 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 OAFQ86UD1 273 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 CDK20Q8IZL9 346 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 LRRC75AQ8NAA5 344 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 OR4K5Q8NGD3 323 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 LILRB1Q8NHL6 650 aaPredicted RBP13.31□□□□□ -0.28
LIG1-219ENST00000600055 ASB10Q8WXI3 467 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 NEUROG1Q92886 237 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 ZNF566Q969W8 418 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 SLC25A44Q96H78 314 aaPredicted RBP13.31□□□□□ -0.28
LIG1-219ENST00000600055 BOD1Q96IK1 185 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 GPA33Q99795 319 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 ULBP2Q9BZM5 246 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 ESRP2Q9H6T0 727 aaKnown RBP13.31□□□□□ -0.28
LIG1-219ENST00000600055 CCM2LQ9NUG4 571 aaPredicted RBP13.31□□□□□ -0.28
LIG1-219ENST00000600055 GLTPQ9NZD2 209 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 AMDHD2Q9Y303 409 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 CSMD1Q96PZ7 3565 aa13.31□□□□□ -0.28
LIG1-219ENST00000600055 LRBAP50851 2863 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 SH3PXD2BA1X283 911 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 ZNF99A8MXY4 864 aaPredicted RBP13.3□□□□□ -0.28
LIG1-219ENST00000600055 MCIDASD6RGH6 385 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 TRMUO75648 421 aaKnown RBP13.3□□□□□ -0.28
LIG1-219ENST00000600055 DNAJC8O75937 253 aaPredicted RBP13.3□□□□□ -0.28
LIG1-219ENST00000600055 ATE1O95260 518 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 PGA4P0DJD7 388 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 PGA3P0DJD8 388 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 ZNF26P17031 533 aaPredicted RBP13.3□□□□□ -0.28
LIG1-219ENST00000600055 LIMS1P48059 325 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 SLC9A3P48764 834 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 SH3BGRP55822 239 aaPredicted RBP13.3□□□□□ -0.28
LIG1-219ENST00000600055 CTXN1P60606 82 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 PRPS1P60891 318 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 MYBPC1Q00872 1141 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 SPOCK1Q08629 439 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 TRAP1Q12931 704 aaKnown RBP13.3□□□□□ -0.28
LIG1-219ENST00000600055 ARMC4Q5T2S8 1044 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 ADAM5Q6NVV9 412 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 LRFN4Q6PJG9 635 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 KLHL24Q6TFL4 600 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 PIWIL3Q7Z3Z3 882 aaKnown RBP13.3□□□□□ -0.28
LIG1-219ENST00000600055 KBTBD8Q8NFY9 601 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 LRGUKQ96M69 825 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 ZNF347Q96SE7 839 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 CADM1Q9BY67 442 aaKnown RBP13.3□□□□□ -0.28
LIG1-219ENST00000600055 B3GAT2Q9NPZ5 323 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 ZNF346Q9UL40 294 aaKnown RBP13.3□□□□□ -0.28
LIG1-219ENST00000600055 TMEM5Q9Y2B1 443 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 POFUT2Q9Y2G5 429 aa13.3□□□□□ -0.28
LIG1-219ENST00000600055 RNF115Q9Y4L5 304 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms