RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 GTF2F2P13984 249 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 CXCL2P19875 107 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 P2RX1P51575 399 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 PSG6Q00889 435 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 GPM6BQ13491 265 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 CBFBQ13951 182 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 SMCO1Q147U7 214 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 FAM109BQ6ICB4 259 aaPredicted RBP13.94□□□□□ -0.18
UPF1-204ENST00000596842 FAM199XQ6PEV8 388 aaPredicted RBP13.94□□□□□ -0.18
UPF1-204ENST00000596842 OOSP2Q86WS3 158 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 OR4D10Q8NGI6 311 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 OR5AK2Q8NH90 309 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 TMEM106AQ96A25 262 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 TSNAXQ99598 290 aaKnown RBP13.94□□□□□ -0.18
UPF1-204ENST00000596842 MICU1Q9BPX6 476 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 DNAJB12Q9NXW2 375 aaKnown RBP13.94□□□□□ -0.18
UPF1-204ENST00000596842 TRAV1-2A0A0B4J238 106 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 RPS10-NUDT3A0A1W2PQS6 291 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 SC5DO75845 299 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 RAB3AP20336 220 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 MAOAP21397 527 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 CEBPEQ15744 281 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 BEX5Q5H9J7 111 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 ULK3Q6PHR2 472 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 ZNF563Q8TA94 476 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 TOE1Q96GM8 510 aaKnown RBP13.94□□□□□ -0.18
UPF1-204ENST00000596842 LAMP5Q9UJQ1 280 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 CDC14CA4D256 554 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 GPR89AB7ZAQ6 455 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 GPR89BP0CG08 455 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 ZNF35P13682 527 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 NFYAP23511 347 aaPredicted RBP13.94□□□□□ -0.18
UPF1-204ENST00000596842 MAOBP27338 520 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 CDKN2AP42771 156 aaKnown RBP13.94□□□□□ -0.18
UPF1-204ENST00000596842 GLB1L2Q8IW92 636 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 ZC3H10Q96K80 434 aaKnown RBP13.94□□□□□ -0.18
UPF1-204ENST00000596842 GPN1Q9HCN4 374 aaPredicted RBP13.94□□□□□ -0.18
UPF1-204ENST00000596842 KLHDC2Q9Y2U9 406 aa13.94□□□□□ -0.18
UPF1-204ENST00000596842 RP1P56715 2156 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 NDUFS6O75380 124 aaKnown RBP13.93□□□□□ -0.18
UPF1-204ENST00000596842 C4BPBP20851 252 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 ACAA2P42765 397 aaKnown RBP13.93□□□□□ -0.18
UPF1-204ENST00000596842 NDUFAF7Q7L592 441 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 PFDN5Q99471 154 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 GFI1Q99684 422 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 C7orf50Q9BRJ6 194 aaKnown RBP13.93□□□□□ -0.18
UPF1-204ENST00000596842 C14orf105Q9NVL8 296 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 CABIN1Q9Y6J0 2220 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 C17orf51A8MQB3 221 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 AIPO00170 330 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 DCTN6O00399 190 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 RBBP9O75884 186 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 LY86O95711 162 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 CELA2BP08218 269 aaPredicted RBP13.93□□□□□ -0.18
UPF1-204ENST00000596842 CCKBRP32239 447 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 DIO1P49895 249 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 ZNF169Q14929 603 aaPredicted RBP13.93□□□□□ -0.18
UPF1-204ENST00000596842 ARMC6Q6NXE6 501 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 PARM1Q6UWI2 310 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 LRRN1Q6UXK5 716 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 STAC2Q6ZMT1 411 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 TAF8Q7Z7C8 310 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 AVL9Q8NBF6 648 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 RELL2Q8NC24 303 aaPredicted RBP13.93□□□□□ -0.18
UPF1-204ENST00000596842 FGF14Q92915 247 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 PPP1R14AQ96A00 147 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 GAL3ST4Q96RP7 486 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 FAM60AQ9NP50 221 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 SLC22A11Q9NSA0 550 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 CHRNA9Q9UGM1 479 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 GABARAPH6UMI1 98 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 KLF8O95600 359 aaPredicted RBP13.93□□□□□ -0.18
UPF1-204ENST00000596842 PRMT2P55345 433 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 TAS2R20P59543 309 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 LTBQ06643 244 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 ILF3Q12906 894 aaKnown RBP eCLIP13.93□□□□□ -0.18
UPF1-204ENST00000596842 SLC6A19Q695T7 634 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 ZNF627Q7L945 461 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 WDR92Q96MX6 357 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 POMT2Q9UKY4 750 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 FARSAQ9Y285 508 aaKnown RBP13.93□□□□□ -0.18
UPF1-204ENST00000596842 SLC6A5Q9Y345 797 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 MED12Q93074 2177 aa13.93□□□□□ -0.18
UPF1-204ENST00000596842 OGG1O15527 345 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 PPM1BO75688 479 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 TMEM196Q5HYL7 178 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 CLLU1Q5K131 121 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 OVCH1Q7RTY7 1134 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 NPEPL1Q8NDH3 523 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 FAM174AQ8TBP5 190 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 TCEAL3Q969E4 200 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 MOGAT1Q96PD6 335 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 JAM3Q9BX67 310 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 EXO5Q9H790 373 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 Q9N2J8 555 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 TRAV8-7A0A075B6U6 113 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 FAM25EA8MYX2 175 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 APBB3O95704 486 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 DYRK1AQ13627 763 aa13.92□□□□□ -0.18
UPF1-204ENST00000596842 C2orf68Q2NKX9 166 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms