RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TGIF1Q15583 401 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.96□□□□□ -0.97
LIG3-216ENST00000593099 MPEG1Q2M385 716 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 LIPKQ5VXJ0 399 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 CEACAM19Q7Z692 300 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 LRRC18Q8N456 261 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 POGLUT1Q8NBL1 392 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 ASB17Q8WXJ9 295 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 FAM71F1Q96KD3 344 aaPredicted RBP8.96□□□□□ -0.97
LIG3-216ENST00000593099 ALG8Q9BVK2 526 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 CHRNA10Q9GZZ6 450 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 C1orf198Q9H425 327 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 IFT22Q9H7X7 185 aa8.96□□□□□ -0.97
LIG3-216ENST00000593099 ARID1BQ8NFD5 2236 aaPredicted RBP8.96□□□□□ -0.98
LIG3-216ENST00000593099 A0A087WUU8 490 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 IFNGR1P15260 489 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 HNF1AP20823 631 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 AP3S2P59780 193 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 ZNF687Q8N1G0 1237 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 SYT4Q9H2B2 425 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 UBE2QL1A1L167 161 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 NKX2-8O15522 239 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 SSX4O60224 188 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 ITGAMP11215 1152 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 MYF6P23409 242 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 SRD5A2P31213 254 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 RPL27P61353 136 aaKnown RBP8.96□□□□□ -0.98
LIG3-216ENST00000593099 FUT7Q11130 342 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 RAB40BQ12829 278 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 GXYLT1Q4G148 440 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 BEND4Q6ZU67 534 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 FCRLAQ7L513 359 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 TMPRSS7Q7RTY8 843 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.96□□□□□ -0.98
LIG3-216ENST00000593099 C15orf40Q8WUR7 153 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 CPNE4Q96A23 557 aaPredicted RBP8.96□□□□□ -0.98
LIG3-216ENST00000593099 Q96M85 177 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 ZFP3Q96NJ6 502 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 ALG12Q9BV10 488 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 OSGIN1Q9UJX0 560 aa8.96□□□□□ -0.98
LIG3-216ENST00000593099 FAM172BPA6NC97 362 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 CDRT1O95170 752 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 CNPY1Q3B7I2 92 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 TP53I3Q53FA7 332 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 TMEM244Q5VVB8 128 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 OR5M9Q8NGP3 310 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 OR5AK2Q8NH90 309 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 NMNAT3Q96T66 252 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 DCSTAMPQ9H295 470 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 BIN3Q9NQY0 253 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 NTNG1Q9Y2I2 539 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 MIA3Q5JRA6 1907 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 H3BUI4 141 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 PRICKLE3O43900 615 aaPredicted RBP8.95□□□□□ -0.98
LIG3-216ENST00000593099 PIP5K1CO60331 668 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 DHFRP00374 187 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 IGHV3-9P01782 118 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 SBK2P0C263 348 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 PCP4P48539 62 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 EFNA3P52797 238 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 FOXK2Q01167 660 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 CRMP1Q14194 572 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 SPINK14Q6IE38 97 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 KIRREL2Q6UWL6 708 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 ESPNLQ6ZVH7 1005 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 PIWIL3Q7Z3Z3 882 aaKnown RBP8.95□□□□□ -0.98
LIG3-216ENST00000593099 MARVELD2Q8N4S9 558 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 PFN4Q8NHR9 129 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 OIT3Q8WWZ8 545 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 GIMAP5Q96F15 307 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 OXGR1Q96P68 337 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 NDRG3Q9UGV2 375 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 SLC35F4A4IF30 521 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 M0R129 80 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 RAB3DO95716 219 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 GABARAPL2P60520 117 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 SCN1BQ07699 218 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 CDK5R2Q13319 367 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 MAD2L1BPQ15013 274 aaPredicted RBP8.95□□□□□ -0.98
LIG3-216ENST00000593099 SLC7A5P1Q8MH63 180 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 ZNF454Q8N9F8 522 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 PTPMT1Q8WUK0 201 aaPredicted RBP8.95□□□□□ -0.98
LIG3-216ENST00000593099 ARSGQ96EG1 525 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 UBQLN3Q9H347 655 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 RYDENQ9NUL5 291 aaKnown RBP8.95□□□□□ -0.98
LIG3-216ENST00000593099 WDR81Q562E7 1941 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 MEGF11A6BM72 1044 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 CLDN25C9JDP6 229 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 AIPO00170 330 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 TNFSF11O14788 317 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 PVALBP20472 110 aaPredicted RBP8.95□□□□□ -0.98
LIG3-216ENST00000593099 CXCR4P61073 352 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 PITPNAQ00169 270 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 PIGFQ07326 219 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 RIPPLY1Q0D2K3 151 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 CDC20Q12834 499 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 VHLLQ6RSH7 139 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 LINGO2Q7L985 606 aa8.95□□□□□ -0.98
LIG3-216ENST00000593099 ZCCHC14Q8WYQ9 949 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms