RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 DDI2Q5TDH0 399 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 FAM220AQ7Z4H9 259 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 BTLAQ7Z6A9 289 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 TPRA1Q86W33 373 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 WDSUB1Q8N9V3 476 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 SUMF1Q8NBK3 374 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 ABHD4Q8TB40 342 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 NTNG2Q96CW9 530 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 ARL5BQ96KC2 179 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 KLHL15Q96M94 604 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 SYT4Q9H2B2 425 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 WDR76Q9H967 626 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 HPF1Q9NWY4 346 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 PLEKHB1Q9UF11 243 aaPredicted RBP12.78□□□□□ -0.36
LIG3-205ENST00000585941 GNG8Q9UK08 70 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 CMAHPQ9Y471 501 aa12.78□□□□□ -0.36
LIG3-205ENST00000585941 A0A1W2PNV4 684 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 CD8B2A6NJW9 211 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 NPIPA5E9PKD4 350 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 CTDSP2O14595 271 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 RGS5O15539 181 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 SEC14L5O43304 696 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 UPK1BO75841 260 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 SERPINA7P05543 415 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 CD8BP10966 210 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 MYL9P24844 172 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 TNFSF8P32971 234 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 HCCSP53701 268 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 SLC3A1Q07837 685 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 DBPQ10586 325 aaPredicted RBP12.77□□□□□ -0.36
LIG3-205ENST00000585941 H3F3CQ6NXT2 135 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 DNM1P34Q6PK57 102 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 PXKQ7Z7A4 578 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 CDC20BQ86Y33 519 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 PM20D2Q8IYS1 436 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 PARP16Q8N5Y8 322 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 ZNF511Q8NB15 262 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 SYT14Q8NB59 555 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 POC1BQ8TC44 478 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 SMAP2Q8WU79 429 aaPredicted RBP12.77□□□□□ -0.36
LIG3-205ENST00000585941 PHYHIPQ92561 330 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 GHSRQ92847 366 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 PGLYRP3Q96LB9 341 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 ADAD1Q96M93 576 aaKnown RBP12.77□□□□□ -0.36
LIG3-205ENST00000585941 TSSK2Q96PF2 358 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 INTS14Q96SY0 518 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 CCDC32Q9BV29 185 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 SH2D2AQ9NP31 389 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 SACM1LQ9NTJ5 587 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 NPIPA1Q9UND3 350 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 COPS3Q9UNS2 423 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 HDGFL3Q9Y3E1 203 aa12.77□□□□□ -0.36
LIG3-205ENST00000585941 SLC22A23A1A5C7 686 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 C4orf47A7E2U8 309 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 MS4A18H0YCH9 400 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 H7C1C5 153 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 LRRTM2O43300 516 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 LRP3O75074 770 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 SC5DO75845 299 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 GATBO75879 557 aaKnown RBP12.77□□□□□ -0.37
LIG3-205ENST00000585941 GDI2P50395 445 aaKnown RBP12.77□□□□□ -0.37
LIG3-205ENST00000585941 LCN6P62502 163 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 EGR3Q06889 387 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 SPEM2Q0P670 501 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 DNASE1L3Q13609 305 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 CSRP2Q16527 193 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 MS4A18Q3C1V0 323 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 ZNF684Q5T5D7 378 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 MZT2AQ6P582 158 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 TRILQ7L0X0 811 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 HDDC2Q7Z4H3 204 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 GLRX5Q86SX6 157 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 RFLNBQ8N5W9 214 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 ACOT12Q8WYK0 555 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 COX4I2Q96KJ9 171 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 C5orf34Q96MH7 638 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 NPAS1Q99742 590 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 MROQ9BYG7 248 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 LAMP5Q9UJQ1 280 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 FBXL2Q9UKC9 423 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 B9D1Q9UPM9 204 aa12.77□□□□□ -0.37
LIG3-205ENST00000585941 MYO15AQ9UKN7 3530 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 SDK2Q58EX2 2172 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 EML6Q6ZMW3 1958 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 TRBV2A0A0J9YWF9 115 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 FAM171A2A8MVW0 826 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 DCTN6O00399 190 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 SNPHO15079 494 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 ARL6IP5O75915 188 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 PLGP00747 810 aaPredicted RBP12.76□□□□□ -0.37
LIG3-205ENST00000585941 KRT8P05787 483 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 CLEC2LP0C7M8 214 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 IMPDH2P12268 514 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 EDNRAP25101 427 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 DSCR4P56555 118 aaPredicted RBP12.76□□□□□ -0.37
LIG3-205ENST00000585941 RPS18P62269 152 aaKnown RBP12.76□□□□□ -0.37
LIG3-205ENST00000585941 PPP3R1P63098 170 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 MYBPHQ13203 477 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 PRAMEF20Q5VT98 475 aa12.76□□□□□ -0.37
LIG3-205ENST00000585941 JMJD6Q6NYC1 403 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms